View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10142_low_13 (Length: 462)
Name: NF10142_low_13
Description: NF10142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10142_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 280; Significance: 1e-156; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 16 - 445
Target Start/End: Original strand, 21421481 - 21421913
Alignment:
| Q |
16 |
agagagaagtcatatcagataatattaaagtcatctcttggaaatggcacttttattaggaataatggcgaccttttttgtatttgaatttttcttgaac |
115 |
Q |
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| T |
21421481 |
agagagaagtcatatcagataatattaaagtcatctcttggaaatgacacttttattaggaataatggtgaccttttttgtatttgaatttttctcaaac |
21421580 |
T |
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| Q |
116 |
cctcttattggccttcttttttagctagtgttgtgttgtttggtgaatcgagtatccattgta-nnnnnnnnnnacttcttctaatgatatgtttgaagt |
214 |
Q |
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| T |
21421581 |
cttcttattggccttcttttttagctagtgttgtgttgtttggtgaatcgagtactcgttgtacttttttttttacttcttctaatgatatatttgaagt |
21421680 |
T |
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| Q |
215 |
taaaatttaaataaaattcaat-catggtagtttgagaacttaatgtctccctttcttaaatccttgaaact---nnnnnnnnngttataacaaagttat |
310 |
Q |
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| T |
21421681 |
taaaatttaaat-aaattcaatccatggtagtttgagaactttatgtctccctttcttaaatccttgaaactctaaaaaaaaaagttataacaaagttat |
21421779 |
T |
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| Q |
311 |
tggaatgaaatatccattttcatttacagtggccaatagttgttgagaaatttattggacacattaaacaagtttattcatccaaatgaaattttattca |
410 |
Q |
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| T |
21421780 |
tggaatgaagtatccattttcatttacagtgg-caatagttgttgagaaatctattggacacattaaacaggtttattcatccaaatgaaattttattca |
21421878 |
T |
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| Q |
411 |
tacacaatggtcagaggtcgaattcatgatcactt |
445 |
Q |
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| T |
21421879 |
tacacaatggtcagaggtcgaattcatgatcactt |
21421913 |
T |
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