View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10142_low_14 (Length: 452)
Name: NF10142_low_14
Description: NF10142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10142_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 413; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 1 - 437
Target Start/End: Original strand, 43260860 - 43261296
Alignment:
| Q |
1 |
attattaatgaaaaagcaaacatatatttaagaaaaaattgagtgagagataaaccttaacaggaggagaagaagctgccttgacaacaaaggaaccttt |
100 |
Q |
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| T |
43260860 |
attattaatgaaaaagcaaacatatatttaaggaaaaattgagtgagagatagaccttaacaggaggagaagaagctgccttgacaacaaaggaaccttt |
43260959 |
T |
|
| Q |
101 |
tctagaagaccctattgaagatgggagtgatcttgctccaaaactctgcctcacagcttcagctgcaaaagtaagagatgatgacgacactagagcttgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43260960 |
tctagaagaccctattgaagatgggagtgatcttgctccaaaactctgtctcacagcttcagctgcaaaagtaagagatgatgacgacactagagcttgt |
43261059 |
T |
|
| Q |
201 |
gtagccatgtttttccctcctctgttgcctctaggaacaagttttttcttcttcaagaatgtagtagatggttaagaatgaatgctagatattgaagtaa |
300 |
Q |
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| T |
43261060 |
gtagccatgtttttccctcctttgttgcctctaggaacaagttttttcttcttcaagaatgtagtagatggttaagaatgaatgatagatattgaagtaa |
43261159 |
T |
|
| Q |
301 |
ctataagtcaaatggaggaagatatgaagaactctaagccacatgcacgcaagcaacgtggaagttcttgtggtgaatattgcatggtgcaatatagtaa |
400 |
Q |
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| T |
43261160 |
ctataagtcaaatggaggaagatatgaagaactctaagccacatgcacccaagcaacgtggaagttcttgtggtgaatattgcatggtgcaatatagtaa |
43261259 |
T |
|
| Q |
401 |
agatgagagtgtgatctagttctccaaccatgtttat |
437 |
Q |
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| T |
43261260 |
agatgagagtgtgatctagttctccaaccatgtttat |
43261296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 291
Target Start/End: Original strand, 43257271 - 43257554
Alignment:
| Q |
1 |
attattaatgaaaaagcaaacatatatttaagaaaaaattgagtgagagataaaccttaacaggaggagaagaagctgccttgacaacaaaggaaccttt |
100 |
Q |
| |
|
||||||||| |||||||||||||||| |||||||||| |||||||||||||||||||| ||||||| || ||||||||||||||||||| ||||| |
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| T |
43257271 |
attattaat-aaaaagcaaacatataattaagaaaaatttgagtgagagataaaccttgacaggagcag------ctgccttgacaacaaaggatccttt |
43257363 |
T |
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| Q |
101 |
tctagaagaccctattgaagatgggagtgatcttgctccaaaactctgcctcacagcttcagctgcaaaagtaagagatgatgacgacactagagcttgt |
200 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||| |||| ||||| |
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| T |
43257364 |
tctagaagacccaattgaagatgggagtgatcttgctccaaaactctgtcttacagcttcagctgcaaaagtaagagatgacgacgacaatagaacttgt |
43257463 |
T |
|
| Q |
201 |
gtagccatgtttttccctcctctgttgcctctaggaacaagttttttcttcttcaagaatgtagtagatggttaagaatgaatgctagata |
291 |
Q |
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| T |
43257464 |
gtagccatgtttttcccttctttgttgcctctaggaacaagttttttcttcttcaagaatgtagtagatggttaagaatgaatgatagata |
43257554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 310 - 338
Target Start/End: Original strand, 43257554 - 43257582
Alignment:
| Q |
310 |
aaatggaggaagatatgaagaactctaag |
338 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
43257554 |
aaatggaggaagatatgaagaactctaag |
43257582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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