View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10142_low_15 (Length: 427)
Name: NF10142_low_15
Description: NF10142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10142_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 130; Significance: 3e-67; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 255 - 417
Target Start/End: Original strand, 47322896 - 47323058
Alignment:
| Q |
255 |
acaataactgcaattgttacagttcccgttttgaatcagagaaataaataagataaaaatggagccaacgacattgaggtnnnnnnnttaaatttttaaa |
354 |
Q |
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| T |
47322896 |
acaataactgcaattgttatagttcccgttttgaatcaaagaaataaataagataaaaatggagccaacgacattgaggtaaaaaaattaaatttttaga |
47322995 |
T |
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| Q |
355 |
aatactttagtattttagaaattgttgcagaagttaatgaaagcttccaagattcaacctttg |
417 |
Q |
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| T |
47322996 |
aatactttagtattttagaaattgttgcagaagttaatgaaagcttccaagattcaacctttg |
47323058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 255 - 417
Target Start/End: Original strand, 47337692 - 47337854
Alignment:
| Q |
255 |
acaataactgcaattgttacagttcccgttttgaatcagagaaataaataagataaaaatggagccaacgacattgaggtnnnnnnnttaaatttttaaa |
354 |
Q |
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||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |
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| T |
47337692 |
acaataactgcaattgttatagttcccgttttgaatcaaagaaataaataagataaaaatggagccaacgacattgaggtaaaaaaattaaatttttaga |
47337791 |
T |
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| Q |
355 |
aatactttagtattttagaaattgttgcagaagttaatgaaagcttccaagattcaacctttg |
417 |
Q |
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| T |
47337792 |
aatactttagtattttagaaattgttgcagaagttaatgaaagcttccaagattcaacctttg |
47337854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 17 - 207
Target Start/End: Original strand, 47322662 - 47322850
Alignment:
| Q |
17 |
agaatcgttgttgccactttccccttcaccattaacataaatcattttgcatnnnnnnnnnnnnnnntcaacataaatcaatcatttacccatttgtgga |
116 |
Q |
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| T |
47322662 |
agaatcgttgttgccactttccccttcaccatcaacataaatcattttgcataaaaaaaaaaaaa--tcaacataaatcaatcatttacccatttgtgga |
47322759 |
T |
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| Q |
117 |
taattgtgatgcaatactgaagttttttccgggtggcaaaccgtgttgaactagaactcagagatctgagtttagaggcatcaaactacaa |
207 |
Q |
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| T |
47322760 |
taattgtgatgcaatgctgaagtttgttccgggtggcaaaccgtgttgaactagaactcggagatctgagtttagaggcatcaaactacaa |
47322850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 17 - 207
Target Start/End: Original strand, 47337458 - 47337646
Alignment:
| Q |
17 |
agaatcgttgttgccactttccccttcaccattaacataaatcattttgcatnnnnnnnnnnnnnnntcaacataaatcaatcatttacccatttgtgga |
116 |
Q |
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| T |
47337458 |
agaatcgttgttgccactttccccttcaccatcaacataaatcattttgcataaaaaaaaaaaaa--tcaacataaatcaatcatttacccatttgtgga |
47337555 |
T |
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| Q |
117 |
taattgtgatgcaatactgaagttttttccgggtggcaaaccgtgttgaactagaactcagagatctgagtttagaggcatcaaactacaa |
207 |
Q |
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| T |
47337556 |
taattgtgatgcaatgctgaagtttgttccgggtggcaaaccgtgttgaactagaactcggagatctgagtttagaggcatcaaactacaa |
47337646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 255 - 417
Target Start/End: Complemental strand, 24667829 - 24667667
Alignment:
| Q |
255 |
acaataactgcaattgttacag-ttcccgttttgaatcagagaaataaataagataaaaatggagccaacgacattgaggtnnnnnnnttaaatttttaa |
353 |
Q |
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||||||| ||||||||||||| ||||| |||| || |||| ||||||||||||||||||| || |||||||||||||||| |||| ||||| |
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| T |
24667829 |
acaataaatgcaattgttacaaattcccatttttaaccagataaataaataagataaaaatagaaccaacgacattgaggtaaaaaatttaa-tttttgg |
24667731 |
T |
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| Q |
354 |
aaatactttagtattttagaaattgttgcagaagttaatgaaagcttccaagattcaacctttg |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||| |||||| |||||||||||| |
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| T |
24667730 |
aaatactttagtattttagaaattgttgcagaagttaatggaagtttccaatattcaacctttg |
24667667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 147 - 207
Target Start/End: Complemental strand, 24667948 - 24667888
Alignment:
| Q |
147 |
gggtggcaaaccgtgttgaactagaactcagagatctgagtttagaggcatcaaactacaa |
207 |
Q |
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| T |
24667948 |
gggtggcaaaccgtgttgaactaaaactcggagatctgagtttagaggcatcaaactacaa |
24667888 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 71; Significance: 5e-32; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 125 - 207
Target Start/End: Original strand, 12599732 - 12599814
Alignment:
| Q |
125 |
atgcaatactgaagttttttccgggtggcaaaccgtgttgaactagaactcagagatctgagtttagaggcatcaaactacaa |
207 |
Q |
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| T |
12599732 |
atgcaatactgaagtttgtttcgggtggcaaaccgtgttgaactagaactcggagatctgagtttagaggcatcaaactacaa |
12599814 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 255 - 301
Target Start/End: Original strand, 12599850 - 12599896
Alignment:
| Q |
255 |
acaataactgcaattgttacagttcccgttttgaatcagagaaataa |
301 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
12599850 |
acaataactgcaattgttacggttcccgttttgaatcagagaaataa |
12599896 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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