View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10142_low_18 (Length: 398)
Name: NF10142_low_18
Description: NF10142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10142_low_18 |
 | |
|
| [»] scaffold0287 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 363; Significance: 0; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 3 - 381
Target Start/End: Original strand, 8975265 - 8975643
Alignment:
| Q |
3 |
ttgtaagtgtaacaatgttgccactactatttctatctgttctatgcctaattattccattgttaatgttcttccacaaacatagaaccattaaacacta |
102 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8975265 |
ttgtaagtgtaacaatgttgccactgctatttctatttgttctatgcctaattattccattgttaatgttcttccacaaacatagaaccattaaacacta |
8975364 |
T |
|
| Q |
103 |
tcccccaggtcctaaaggccttccaataatagggaatcttcatcaactagacatttctaatctttatcttcaattttctcaattctcaaaaatatatggt |
202 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8975365 |
ccccccaggtcctaaaggccttccaataatagggaatcttcatcaactagacatttctaatctttatcttcaattttctcaattctcaaaaatatatggt |
8975464 |
T |
|
| Q |
203 |
cctctattttcacttcaacttggtttaagaccagctattgttgtttcttcagctgaaattgccaaagaagtgttgaaaaacaatgatcatgtgttttcta |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8975465 |
cctctattttcacttcaacttggtttaagaccagctattgttgtttgttcagctgaaattgccaaagaagtgttgaaaaacaatgatcatgtgttttcta |
8975564 |
T |
|
| Q |
303 |
atagacctaaattatatggtcaacaaaaattatcttataatgggtcagaaattgtattttctccatacagtgatatttg |
381 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8975565 |
atagacctaaattatatggtcaacaaaaattatcttataatgggtcagaaattgtattttctccatacagtgatatttg |
8975643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 10 - 381
Target Start/End: Complemental strand, 8972777 - 8972406
Alignment:
| Q |
10 |
tgtaacaatgttgccactactatttctatctgttctatgcctaattattccattgttaatgttcttccacaaacatagaaccattaaacactatccccca |
109 |
Q |
| |
|
|||||||||||| ||||||||||||| | |||| | ||| | ||| |||| ||| | ||||||||||||||| ||||||||| |||| | ||||| || |
|
|
| T |
8972777 |
tgtaacaatgttttcactactatttctctttgttgtgtgcttcattcttcctttgcttatgttcttccacaaatatagaaccaataaaaattatccacct |
8972678 |
T |
|
| Q |
110 |
ggtcctaaaggccttccaataatagggaatcttcatcaactagacatttctaatctttatcttcaattttctcaattctcaaaaatatatggtcctctat |
209 |
Q |
| |
|
||||||||||||||||| |||||||| ||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||| ||||||||||||||| |
|
|
| T |
8972677 |
ggtcctaaaggccttcccataataggaaatcttcatcaactagatatttctaagctttatcttcaattatctcaattctcaaaattatatggtcctctat |
8972578 |
T |
|
| Q |
210 |
tttcacttcaacttggtttaagaccagctattgttgtttcttcagctgaaattgccaaagaagtgttgaaaaacaatgatcatgtgttttctaatagacc |
309 |
Q |
| |
|
|||||||| |||||||||||||| |||||||||||||||||||||||||||||| |||||||| |||||| |||||| | |||| |||||||||||||| |
|
|
| T |
8972577 |
tttcactttcacttggtttaagacaagctattgttgtttcttcagctgaaattgcaaaagaagtattgaaagacaatggtaatgttttttctaatagacc |
8972478 |
T |
|
| Q |
310 |
taaattatatggtcaacaaaaattatcttataatgggtcagaaattgtattttctccatacagtgatatttg |
381 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| |||||| |||| |
|
|
| T |
8972477 |
tatattatatggtcaacaaaaattatcttataatgggtcagaaatggtattttctcaatatagtgatttttg |
8972406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 10 - 381
Target Start/End: Original strand, 9027024 - 9027395
Alignment:
| Q |
10 |
tgtaacaatgttgccactactatttctatctgttctatgcctaattattccattgttaatgttcttccacaaacatagaaccattaaacactatccccca |
109 |
Q |
| |
|
||||||||||||| || ||||| ||||| || ||||||||||||| |||| ||| |||| |||||||| || ||||||||||||||||| ||||| | |
|
|
| T |
9027024 |
tgtaacaatgttgtcaatactaattctacttgctctatgcctaattcttcctttgctaatattcttccaaaaccatagaaccattaaacattatccactt |
9027123 |
T |
|
| Q |
110 |
ggtcctaaaggccttccaataatagggaatcttcatcaactagacatttctaatctttatcttcaattttctcaattctcaaaaatatatggtcctctat |
209 |
Q |
| |
|
||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||| | ||||| |||||||||||||||| |||||||||||||||| |
|
|
| T |
9027124 |
ggtcctaaaggacttcccataataggaaatcttcatcaactagacatttctaatcttcctattcaactttctcaattctcaaagatatatggtcctctat |
9027223 |
T |
|
| Q |
210 |
tttcacttcaacttggtttaagaccagctattgttgtttcttcagctgaaattgccaaagaagtgttgaaaaacaatgatcatgtgttttctaatagacc |
309 |
Q |
| |
|
||||| |||||||||| |||||| |||||||||||||||||||||||||||||| |||||||| ||||||| |||||| ||| |||||||| ||||||| |
|
|
| T |
9027224 |
tttcaattcaacttggattaagaaaagctattgttgtttcttcagctgaaattgcaaaagaagtattgaaaaccaatgaccatttgttttctgatagacc |
9027323 |
T |
|
| Q |
310 |
taaattatatggtcaacaaaaattatcttataatgggtcagaaattgtattttctccatacagtgatatttg |
381 |
Q |
| |
|
|| |||||||| |||||||||||| ||||||| ||||| |||||| ||||||| | ||||| |||| |||| |
|
|
| T |
9027324 |
tagattatatgctcaacaaaaattgacttataacgggtcggaaattatattttcacaatacactgatttttg |
9027395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 12 - 354
Target Start/End: Complemental strand, 9002837 - 9002495
Alignment:
| Q |
12 |
taacaatgttgccactactatttctatctgttctatgcctaattattccattgttaatgttcttccacaaacatagaaccattaaacactatcccccagg |
111 |
Q |
| |
|
||||||||||| || ||||||||||| || |||||||||||||||||| ||| |||| |||||||| || |||||||| |||||||| ||||| | || |
|
|
| T |
9002837 |
taacaatgttgtcagtactatttctacttgctctatgcctaattattcctttgctaatattcttccaaaaccatagaacaattaaacattatccacttgg |
9002738 |
T |
|
| Q |
112 |
tcctaaaggccttccaataatagggaatcttcatcaactagacatttctaatctttatcttcaattttctcaattctcaaaaatatatggtcctctattt |
211 |
Q |
| |
|
||||||||||||||| |||||||| |||||||||||||||||||||||||||||| | ||||| |||||||||||||||| | |||||||||||||||| |
|
|
| T |
9002737 |
tcctaaaggccttcccataataggaaatcttcatcaactagacatttctaatcttcctattcaactttctcaattctcaaagacatatggtcctctattt |
9002638 |
T |
|
| Q |
212 |
tcacttcaacttggtttaagaccagctattgttgtttcttcagctgaaattgccaaagaagtgttgaaaaacaatgatcatgtgttttctaatagaccta |
311 |
Q |
| |
|
||| |||||||||| |||||| |||||||||||||||||| || |||||||| |||||||| ||||||| |||||| || |||||||||||||||||| |
|
|
| T |
9002637 |
tcaattcaacttggattaagaaaagctattgttgtttcttctgccgaaattgcaaaagaagtattgaaaaccaatgaccaattgttttctaatagaccta |
9002538 |
T |
|
| Q |
312 |
aattatatggtcaacaaaaattatcttataatgggtcagaaat |
354 |
Q |
| |
|
|||||||||||||||||| || |||||||||||||||||||| |
|
|
| T |
9002537 |
tattatatggtcaacaaaagttgtcttataatgggtcagaaat |
9002495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 68 - 369
Target Start/End: Original strand, 8952241 - 8952542
Alignment:
| Q |
68 |
atgttcttccacaaacatagaaccattaaacactatcccccaggtcctaaaggccttccaataatagggaatcttcatcaactagacatttctaatcttt |
167 |
Q |
| |
|
||||||||||||||||||| ||| | || | | |||| || |||||||||||||||||||||||||||||||||| |||||||| || || |||||| |
|
|
| T |
8952241 |
atgttcttccacaaacataaaacaaatacaaataatccacctggtcctaaaggccttccaataatagggaatcttctacaactagatatctcaaatcttc |
8952340 |
T |
|
| Q |
168 |
atcttcaattttctcaattctcaaaaatatatggtcctctattttcacttcaacttggtttaagaccagctattgttgtttcttcagctgaaattgccaa |
267 |
Q |
| |
|
|| |||||||||||||||||||||| |||||||||||| | ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8952341 |
attttcaattttctcaattctcaaagatatatggtcctttgttttcacttaaacttggtttaagaccagctattgttgtttcttcagctgaaattgccaa |
8952440 |
T |
|
| Q |
268 |
agaagtgttgaaaaacaatgatcatgtgttttctaatagacctaaattatatggtcaacaaaaattatcttataatgggtcagaaattgtattttctcca |
367 |
Q |
| |
|
|||||| || |||||||||||||||||||||||||||||||||| || |||||||||| | | ||| | ||||||||||||||||||||| ||| ||||| |
|
|
| T |
8952441 |
agaagtattcaaaaacaatgatcatgtgttttctaatagacctatatcatatggtcaaaacatattgtgttataatgggtcagaaattgtttttgctcca |
8952540 |
T |
|
| Q |
368 |
ta |
369 |
Q |
| |
|
|| |
|
|
| T |
8952541 |
ta |
8952542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 110 - 381
Target Start/End: Complemental strand, 8930749 - 8930478
Alignment:
| Q |
110 |
ggtcctaaaggccttccaataatagggaatcttcatcaactagacatttctaatctttatcttcaattttctcaattctcaaaaatatatggtcctctat |
209 |
Q |
| |
|
||||||| |||||| || |||||||||||||||||||||||||||| ||||| |||||||||||||||||| || | |||||||| ||||| || ||| |
|
|
| T |
8930749 |
ggtcctagaggcctacccataatagggaatcttcatcaactagacaattctattctttatcttcaattttcaaaactttcaaaaatttatggaccaatat |
8930650 |
T |
|
| Q |
210 |
tttcacttcaacttggtttaagaccagctattgttgtttcttcagctgaaattgccaaagaagtgttgaaaaacaatgatcatgtgttttctaatagacc |
309 |
Q |
| |
|
||||||||||||| ||||||||| ||||||||||||||||||| ||||||||||| |||||| | || ||||| |||||||| ||||||||||||||||| |
|
|
| T |
8930649 |
tttcacttcaactaggtttaagatcagctattgttgtttcttcggctgaaattgcgaaagaaatatttaaaaataatgatcaagtgttttctaatagacc |
8930550 |
T |
|
| Q |
310 |
taaattatatggtcaacaaaaattatcttataatgggtcagaaattgtattttctccatacagtgatatttg |
381 |
Q |
| |
|
| |||||||| || |||||||||||||||||||||||||| |||| |||||||| ||| |||||| |||| |
|
|
| T |
8930549 |
tgtgttatatggccagcaaaaattatcttataatgggtcagacattgcattttctcaatatagtgatttttg |
8930478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 113 - 381
Target Start/End: Complemental strand, 8916906 - 8916638
Alignment:
| Q |
113 |
cctaaaggccttccaataatagggaatcttcatcaactagacatttctaatctttatcttcaattttctcaattctcaaaaatatatggtcctctatttt |
212 |
Q |
| |
|
|||| |||||| || ||||| |||||||||||||| || |||| ||||| ||||||||||||||| || || | |||||||| ||||| || |||||| |
|
|
| T |
8916906 |
cctagaggcctacccataattgggaatcttcatcagcttgacaattctattctttatcttcaattatcaaaactttcaaaaatttatggaccaatatttt |
8916807 |
T |
|
| Q |
213 |
cacttcaacttggtttaagaccagctattgttgtttcttcagctgaaattgccaaagaagtgttgaaaaacaatgatcatgtgttttctaatagacctaa |
312 |
Q |
| |
|
| | ||||||||||||| ||||| |||||||||||||||| | ||||||||||||| | || ||||| |||||||||||||||||||||||||||| |
|
|
| T |
8916806 |
ccttgaaacttggtttaaggccagcaattgttgtttcttcagataaaattgccaaagagatatttaaaaataatgatcatgtgttttctaatagacctat |
8916707 |
T |
|
| Q |
313 |
attatatggtcaacaaaaattatcttataatgggtcagaaattgtattttctccatacagtgatatttg |
381 |
Q |
| |
|
||||||||||| |||| ||||||||||||||||||||||||||||||||||| ||| |||||| |||| |
|
|
| T |
8916706 |
gttatatggtcagcaaagattatcttataatgggtcagaaattgtattttctcaatatagtgatttttg |
8916638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 113 - 381
Target Start/End: Complemental strand, 8906062 - 8905794
Alignment:
| Q |
113 |
cctaaaggccttccaataatagggaatcttcatcaactagacatttctaatctttatcttcaattttctcaattctcaaaaatatatggtcctctatttt |
212 |
Q |
| |
|
|||| |||||| || ||||| |||||||||||||| || |||| ||||| ||||||||||||||| || | | |||||||| ||||| || |||||| |
|
|
| T |
8906062 |
cctagaggcctacccataattgggaatcttcatcagcttgacaattctattctttatcttcaattatcaaatctttcaaaaatttatggaccaatatttt |
8905963 |
T |
|
| Q |
213 |
cacttcaacttggtttaagaccagctattgttgtttcttcagctgaaattgccaaagaagtgttgaaaaacaatgatcatgtgttttctaatagacctaa |
312 |
Q |
| |
|
| | ||||||||||||| ||||| |||||||||||||||| | ||||||||||||| | || ||||| |||||||||||||||||||||||||||| |
|
|
| T |
8905962 |
ccttgaaacttggtttaaggccagcaattgttgtttcttcagataaaattgccaaagagatatttaaaaataatgatcatgtgttttctaatagacctat |
8905863 |
T |
|
| Q |
313 |
attatatggtcaacaaaaattatcttataatgggtcagaaattgtattttctccatacagtgatatttg |
381 |
Q |
| |
|
||||||||||| |||| ||||||||||||||||||||||||||||||||||| ||| |||||| |||| |
|
|
| T |
8905862 |
gttatatggtcagcaaagattatcttataatgggtcagaaattgtattttctcaatatagtgatttttg |
8905794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 147; Significance: 2e-77; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 110 - 376
Target Start/End: Complemental strand, 9401754 - 9401488
Alignment:
| Q |
110 |
ggtcctaaaggccttccaataatagggaatcttcatcaactagacatttctaatctttatcttcaattttctcaattctcaaaaatatatggtcctctat |
209 |
Q |
| |
|
||||||| |||||| || |||||||||||||||||||| ||||||| ||||| ||||||||||||||| || || | |||||||||||||| || ||| |
|
|
| T |
9401754 |
ggtcctagaggcctacccataatagggaatcttcatcagctagacaattctactctttatcttcaattatcaaaactttcaaaaatatatggaccaatat |
9401655 |
T |
|
| Q |
210 |
tttcacttcaacttggtttaagaccagctattgttgtttcttcagctgaaattgccaaagaagtgttgaaaaacaatgatcatgtgttttctaatagacc |
309 |
Q |
| |
|
|||||||||||||||||||||| ||||| |||||||||||||||||| |||||||||||||| | || ||| |||||||||||||||||| ||||||||| |
|
|
| T |
9401654 |
tttcacttcaacttggtttaaggccagcaattgttgtttcttcagctaaaattgccaaagaaatatttaaagacaatgatcatgtgttttgtaatagacc |
9401555 |
T |
|
| Q |
310 |
taaattatatggtcaacaaaaattatcttataatgggtcagaaattgtattttctccatacagtgat |
376 |
Q |
| |
|
|| ||||||| ||||||||||||||||||||||| |||||||||| |||||||| ||| |||||| |
|
|
| T |
9401554 |
tatcctatatggccaacaaaaattatcttataatggatcagaaattgcattttctcaatatagtgat |
9401488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 113 - 381
Target Start/End: Complemental strand, 20076099 - 20075831
Alignment:
| Q |
113 |
cctaaaggccttccaataatagggaatcttcatcaactagacatttctaatctttatcttcaattttctcaattctcaaaaatatatggtcctctatttt |
212 |
Q |
| |
|
|||| |||||| || ||||| |||||||||||||| || || | ||||| ||| ||||||||||| || || | |||||||| ||||| || |||||| |
|
|
| T |
20076099 |
cctagaggcctacccataattgggaatcttcatcagcttgataattctattctctatcttcaattatcaaaactttcaaaaatttatggaccaatatttt |
20076000 |
T |
|
| Q |
213 |
cacttcaacttggtttaagaccagctattgttgtttcttcagctgaaattgccaaagaagtgttgaaaaacaatgatcatgtgttttctaatagacctaa |
312 |
Q |
| |
|
| | ||||||||||||| ||||| |||||||||||||||| | ||||||||||||| | || ||||| |||||||||||||||||||||||||||| |
|
|
| T |
20075999 |
ccatgaaacttggtttaaggccagcaattgttgtttcttcagataaaattgccaaagagatatttaaaaataatgatcatgtgttttctaatagacctat |
20075900 |
T |
|
| Q |
313 |
attatatggtcaacaaaaattatcttataatgggtcagaaattgtattttctccatacagtgatatttg |
381 |
Q |
| |
|
|||||||| || |||| ||||||||||||||||||||||||||||||||||| ||| |||||| |||| |
|
|
| T |
20075899 |
gttatatggccagcaaagattatcttataatgggtcagaaattgtattttctcaatatagtgatttttg |
20075831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0287 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0287
Description:
Target: scaffold0287; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 109 - 228
Target Start/End: Original strand, 14118 - 14237
Alignment:
| Q |
109 |
aggtcctaaaggccttccaataatagggaatcttcatcaactagacatttctaatctttatcttcaattttctcaattctcaaaaatatatggtcctcta |
208 |
Q |
| |
|
|||||| ||||||||||| ||||| || ||||| |||||||| |||| ||| |||||| || | ||||||| | |||||||||| ||||||||||| |
|
|
| T |
14118 |
aggtccaaaaggccttcctataattggaaatctccatcaacttgacacttcaaatcttcatttacaattttggaatctctcaaaaatctatggtcctctt |
14217 |
T |
|
| Q |
209 |
ttttcacttcaacttggttt |
228 |
Q |
| |
|
|| || |||||| ||||||| |
|
|
| T |
14218 |
ttctctcttcaaattggttt |
14237 |
T |
|
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Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 109 - 228
Target Start/End: Complemental strand, 3631967 - 3631848
Alignment:
| Q |
109 |
aggtcctaaaggccttccaataatagggaatcttcatcaactagacatttctaatctttatcttcaattttctcaattctcaaaaatatatggtcctcta |
208 |
Q |
| |
|
|||||| ||||||||||| ||||| || ||||| |||||||| |||| ||| |||||| || | ||||||| | |||||||||| ||||||||||| |
|
|
| T |
3631967 |
aggtccaaaaggccttcctataattggaaatctccatcaacttgacacttcaaatcttcatttacaattttggaatctctcaaaaatctatggtcctctt |
3631868 |
T |
|
| Q |
209 |
ttttcacttcaacttggttt |
228 |
Q |
| |
|
|| || |||||| ||||||| |
|
|
| T |
3631867 |
ttctctcttcaaattggttt |
3631848 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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