View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10142_low_19 (Length: 397)
Name: NF10142_low_19
Description: NF10142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10142_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 253; Significance: 1e-140; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 46 - 382
Target Start/End: Original strand, 5563392 - 5563730
Alignment:
| Q |
46 |
ggatcgtagagaccattttgagctggtgtaacacactcttcaagttcttcaacaaggaaggagagctgatggaaaaattgctcaagtctttctctgcact |
145 |
Q |
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| T |
5563392 |
ggatcgtagagaccattttgagctggtgtaacacactcttcaagttcttcaacaaggaaggagagctgatggaaaaattgctcaagtctttctctgcact |
5563491 |
T |
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| Q |
146 |
caggatcttgcttcaacaaccaaggaaagtactttctatttc-nnnnnnnnacatactttttagttaatttcttagtttgtttctcattgcatgttcatt |
244 |
Q |
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| T |
5563492 |
caggatcttgcttcaacaaacaaggaaagtactttctatttctttttttttacatactttttagttaatttcttagtttgtttctcattgcatgttcatt |
5563591 |
T |
|
| Q |
245 |
tcccttttattctgattttgag-nnnnnnnnnnnnnngggtctttgtcatttcctttctcattttgctccttttctcttcattcctcacctcattcacaa |
343 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5563592 |
tcccttttattctgattttgagtttttttatttttttgggtctttgtcatttcctttctcattttgctccttttctcttcattcctcacctcattcacaa |
5563691 |
T |
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| Q |
344 |
ccatctttcacccataaaaaattcaacaaccatgattgt |
382 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
5563692 |
ccatctttcacccataaaaaattcaacaaccatgattgt |
5563730 |
T |
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