View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10142_low_20 (Length: 389)
Name: NF10142_low_20
Description: NF10142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10142_low_20 |
 | |
|
| [»] chr1 (5 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 361; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 13 - 389
Target Start/End: Complemental strand, 46344753 - 46344377
Alignment:
| Q |
13 |
agcaaagggggtggaaatagcaaatggacagggtttgtttgatcaaatatctggtggtggaattccatggttcttggggacaagtgtgttgttgtcactt |
112 |
Q |
| |
|
||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46344753 |
agcaatgggggtggaaatagcaaaaggacagggtttgtttgatcaaatatctggtggtggaattccatggttcttggggacaagtgtgttgttgtcactt |
46344654 |
T |
|
| Q |
113 |
gcttctttgattccatttttccaaggtgttagtgttgagtccaagtcaaaaggtgttatgtcttcagatgcagaactatggaatggaagaattgctatgt |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46344653 |
gcttctttgattccatttttccaaggtgttagtgttgagtccaagtcaaaaggtgttatgtcttcagatgcagaactatggaatggaagaattgctatgt |
46344554 |
T |
|
| Q |
213 |
tgggtttgattgctttggcttttacagagtatgttaagggtacctcccttgtgtaatagaattctttagtgacactgttaaggcttatagaatttgtggt |
312 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46344553 |
tgggtttgattgctttggcctttacagagtatgttaagggtacctcccttgtgtaatagatttctttagtgacactgttaaggcttatagaatttgtggt |
46344454 |
T |
|
| Q |
313 |
tagcagtcaatatatgaaactttttgtatacgaaactttttggcattctccttcctttattctcttatttctaagag |
389 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46344453 |
tagcagtcaatatatgaaactttttgtatacgaaactttttggcattctccttcctttattctcttatttctaagag |
46344377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 13 - 277
Target Start/End: Original strand, 46451803 - 46452067
Alignment:
| Q |
13 |
agcaaagggggtggaaatagcaaatggacagggtttgtttgatcaaatatctggtggtggaattccatggttcttggggacaagtgtgttgttgtcactt |
112 |
Q |
| |
|
||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46451803 |
agcaatgggggtggaaatagcaaaaggacagggtttgtttgatcaaatatctggtggtggaattccatggttcttggggacaagtgtgttgttgtcactt |
46451902 |
T |
|
| Q |
113 |
gcttctttgattccatttttccaaggtgttagtgttgagtccaagtcaaaaggtgttatgtcttcagatgcagaactatggaatggaagaattgctatgt |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46451903 |
gcttctttgattccatttttccaaggtgttagtgttgagtccaagtcaaaaggtgttatgtcttcagatgcagaactatggaatggaagaattgctatgt |
46452002 |
T |
|
| Q |
213 |
tgggtttgattgctttggcttttacagagtatgttaagggtacctcccttgtgtaatagaattct |
277 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
46452003 |
tgggtttgattgctttggcttttacagagtatgttaagggtacctcccttgtgtaatagatttct |
46452067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 13 - 277
Target Start/End: Original strand, 46462771 - 46463035
Alignment:
| Q |
13 |
agcaaagggggtggaaatagcaaatggacagggtttgtttgatcaaatatctggtggtggaattccatggttcttggggacaagtgtgttgttgtcactt |
112 |
Q |
| |
|
||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46462771 |
agcaatgggggtggaaatagcaaaaggacagggtttgtttgatcaaatatctggtggtggaattccatggttcttggggacaagtgtgttgttgtcactt |
46462870 |
T |
|
| Q |
113 |
gcttctttgattccatttttccaaggtgttagtgttgagtccaagtcaaaaggtgttatgtcttcagatgcagaactatggaatggaagaattgctatgt |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46462871 |
gcttctttgattccatttttccaaggtgttagtgttgagtccaagtcaaaaggtgttatgtcttcagatgcagaactatggaatggaagaattgctatgt |
46462970 |
T |
|
| Q |
213 |
tgggtttgattgctttggcttttacagagtatgttaagggtacctcccttgtgtaatagaattct |
277 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
46462971 |
tgggtttgattgctttggcctttacagagtatgttaagggtacctcccttgtgtaatagatttct |
46463035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 14 - 268
Target Start/End: Original strand, 46466194 - 46466448
Alignment:
| Q |
14 |
gcaaagggggtggaaatagcaaatggacagggtttgtttgatcaaatatctggtggtggaattccatggttcttggggacaagtgtgttgttgtcacttg |
113 |
Q |
| |
|
|||| |||||||||| ||||||| || ||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||||||||||| || ||| |
|
|
| T |
46466194 |
gcaatgggggtggaattagcaaaagggcagggtttgttcgatcaaatatctggtggtggaatcccatggttcttgtatacaagtgtgttgttgacagttg |
46466293 |
T |
|
| Q |
114 |
cttctttgattccatttttccaaggtgttagtgttgagtccaagtcaaaaggtgttatgtcttcagatgcagaactatggaatggaagaattgctatgtt |
213 |
Q |
| |
|
|||||||| ||||||| || ||||||||||||||||||| |||||||||||| | ||||| ||| ||||||| || ||||||||||||||||||||||| |
|
|
| T |
46466294 |
cttctttggttccattatttgaaggtgttagtgttgagtctaagtcaaaaggtatcatgtcctcaaatgcagagctttggaatggaagaattgctatgtt |
46466393 |
T |
|
| Q |
214 |
gggtttgattgctttggcttttacagagtatgttaagggtacctcccttgtgtaa |
268 |
Q |
| |
|
||||||||||||| ||||| ||||||| |||||||||||||| ||||||||||| |
|
|
| T |
46466394 |
gggtttgattgctctggctgttacagaatatgttaagggtactgcccttgtgtaa |
46466448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 14 - 268
Target Start/End: Original strand, 46471399 - 46471653
Alignment:
| Q |
14 |
gcaaagggggtggaaatagcaaatggacagggtttgtttgatcaaatatctggtggtggaattccatggttcttggggacaagtgtgttgttgtcacttg |
113 |
Q |
| |
|
|||| |||||||||| ||||||| || ||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||||||||||| || ||| |
|
|
| T |
46471399 |
gcaatgggggtggaattagcaaaagggcagggtttgttcgatcaaatatctggtggtggaatcccatggttcttgtatacaagtgtgttgttgacagttg |
46471498 |
T |
|
| Q |
114 |
cttctttgattccatttttccaaggtgttagtgttgagtccaagtcaaaaggtgttatgtcttcagatgcagaactatggaatggaagaattgctatgtt |
213 |
Q |
| |
|
|||||||| ||||||| || ||||||||||||||||||| |||||||||||| | ||||| ||| ||||||| || ||||||||||||||||||||||| |
|
|
| T |
46471499 |
cttctttggttccattatttgaaggtgttagtgttgagtctaagtcaaaaggtatcatgtcctcaaatgcagagctttggaatggaagaattgctatgtt |
46471598 |
T |
|
| Q |
214 |
gggtttgattgctttggcttttacagagtatgttaagggtacctcccttgtgtaa |
268 |
Q |
| |
|
||||||||||||| ||||| ||||||| |||||||||||||| ||||||||||| |
|
|
| T |
46471599 |
gggtttgattgctctggctgttacagaatatgttaagggtactgcccttgtgtaa |
46471653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University