View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10142_low_21 (Length: 385)
Name: NF10142_low_21
Description: NF10142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10142_low_21 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 16 - 385
Target Start/End: Original strand, 37811349 - 37811718
Alignment:
| Q |
16 |
cagaaaattcatcctcttaggccgcaggagctttgttttgtcgatacccattctttcatcaaaatgaggattagattcaggattaacatccaatacaggt |
115 |
Q |
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| T |
37811349 |
cagaaaattcatcctcttaggccgcaggagctttgttttgtcgatacccattctttcatcaaaatgaggattagattcaggattaacatccaatacaggt |
37811448 |
T |
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| Q |
116 |
tttagtatttcaaatgcatctttcttctgtttattaatgttgacctttaatgtgctaaggttgcttggcttagttacattaacaacatttccatgtacat |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
37811449 |
tttagtatttcaaatgcatctttcttctgtttattaatgttgacctttaatgtgctaaggttgcttggcttagttacattaacaacatttccatgttcat |
37811548 |
T |
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| Q |
216 |
ctatttcacgtccctgggcgtcaagacgaagaacaggagctttggttctcttattcaactgaggaattttcttcagcttctctgataacaatttctgaat |
315 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
37811549 |
ctatttcacgtccctgggcgtcaagacgaagaaaaggagctttggttctcttattcaactgaggaattttcttcagcttctctgacaacaatttctgaat |
37811648 |
T |
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| Q |
316 |
ttgtaaagccttcttagcctttgctaaggcatcactactagagagtcttccaagtttatcaccaaatctc |
385 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
37811649 |
ttgtaaagccttcttagcctttgctaaggcatcactactagagaggcttccaagtttatcaccaaatctc |
37811718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 46 - 372
Target Start/End: Original strand, 17208860 - 17209179
Alignment:
| Q |
46 |
ctttgttttgtcgatacccattctttcatcaaaatgaggattagattcaggattaacatccaatacaggttttagtatttcaaatgcatctttcttctgt |
145 |
Q |
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| T |
17208860 |
ctttgttttgtcgatacccattctctcgtcgaaatgaggattagattcaggatcgacatccaatacaggttttagtatttcaaatgcatctttcttatgt |
17208959 |
T |
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| Q |
146 |
ttattaatgttgacctttaatgtgctaaggttgcttggcttagttacattaacaacatttccatgtacatctatttcacgtccctgggcgtcaagacgaa |
245 |
Q |
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||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
17208960 |
ttattaatgatgacctttaatgtgctaa-gttgcttggcttagttacattaacaacatttccatgttcatctatttcacgtccctgggcgtcaagacgaa |
17209058 |
T |
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| Q |
246 |
gaacaggagctttggttctcttattcaactgaggaattttcttcagcttctctgataacaatttctgaatttgtaaagccttcttagcctttgctaaggc |
345 |
Q |
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||| |||||| |||||| || |||||||||||||||| |||||| |||||| |||||||| |||||||||||||||||||||||||||||||| |
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| T |
17209059 |
gaaaaggagccttggttggttt------ctgaggaattttcttcggcttctatgataataatttctgcatttgtaaagccttcttagcctttgctaaggc |
17209152 |
T |
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| Q |
346 |
atcactactagagagtcttccaagttt |
372 |
Q |
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|||||||||||||| ||||||||||| |
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| T |
17209153 |
atcactactagagaagcttccaagttt |
17209179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 103 - 312
Target Start/End: Original strand, 17199985 - 17200181
Alignment:
| Q |
103 |
atccaatacaggttttagtatttcaaatgcatctttcttctgtttattaatgttgacctttaatgtgctaaggttgcttggcttagttacattaacaaca |
202 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || |||||||||||||||||||||||||||||||| | |
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| T |
17199985 |
atccaatacaggttttagtatttcaaatgcatctttcttatgtttattaatgttgagct-------gctaaggttgcttggcttagttacattaacaaaa |
17200077 |
T |
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| Q |
203 |
tttccatgtacatctatttcacgtccctgggcgtcaagacgaagaacaggagctttggttctcttattcaactgaggaattttcttcagcttctctgata |
302 |
Q |
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| T |
17200078 |
tttccatgttcatctatttcacgtccctgggcgtcaagacgaagaacaggagccttggttggttt------ctgaggaattttcttcagcttctctgaca |
17200171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 134; Significance: 1e-69; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 16 - 161
Target Start/End: Original strand, 52355356 - 52355501
Alignment:
| Q |
16 |
cagaaaattcatcctcttaggccgcaggagctttgttttgtcgatacccattctttcatcaaaatgaggattagattcaggattaacatccaatacaggt |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
52355356 |
cagaaaattcatcctcttaggccgcaggagctttgttttgtcgatacccattctctcatcaaaatgaggattagattcaggatcgacatccaatacaggt |
52355455 |
T |
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| Q |
116 |
tttagtatttcaaatgcatctttcttctgtttattaatgttgacct |
161 |
Q |
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| T |
52355456 |
tttagtatttcaaatgcatctttcttctgtttattaatgttgacct |
52355501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 158 - 262
Target Start/End: Original strand, 52355587 - 52355691
Alignment:
| Q |
158 |
acctttaatgtgctaaggttgcttggcttagttacattaacaacatttccatgtacatctatttcacgtccctgggcgtcaagacgaagaacaggagctt |
257 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| | |
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| T |
52355587 |
acctttaatgtgctaaggttgcttggcttagtcacattaacaacatttccatgttcatctatttcacgtccctgggcatcaagacgaagaacaggagcct |
52355686 |
T |
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| Q |
258 |
tggtt |
262 |
Q |
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||||| |
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| T |
52355687 |
tggtt |
52355691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 274 - 372
Target Start/End: Original strand, 52356185 - 52356283
Alignment:
| Q |
274 |
ctgaggaattttcttcagcttctctgataacaatttctgaatttgtaaagccttcttagcctttgctaaggcatcactactagagagtcttccaagttt |
372 |
Q |
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|||||||||||||||||||||| |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
52356185 |
ctgaggaattttcttcagcttcgctgacaacaatttctgcatttgtaaagccttcttagcctttgctaaggcatcactactagagaggcttccaagttt |
52356283 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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