View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10142_low_22 (Length: 385)

Name: NF10142_low_22
Description: NF10142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10142_low_22
NF10142_low_22
[»] chr3 (2 HSPs)
chr3 (1-368)||(13886538-13886905)
chr3 (223-263)||(43403172-43403212)
[»] chr5 (1 HSPs)
chr5 (239-355)||(16136232-16136347)
[»] chr8 (1 HSPs)
chr8 (221-360)||(18198331-18198470)
[»] chr2 (3 HSPs)
chr2 (220-270)||(16676812-16676862)
chr2 (167-200)||(28861818-28861851)
chr2 (220-270)||(7858539-7858589)
[»] chr7 (2 HSPs)
chr7 (221-354)||(38281333-38281466)
chr7 (22-161)||(5044095-5044237)
[»] scaffold0009 (1 HSPs)
scaffold0009 (72-160)||(26710-26799)


Alignment Details
Target: chr3 (Bit Score: 332; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 1 - 368
Target Start/End: Original strand, 13886538 - 13886905
Alignment:
Q  1 agaatgaaatatgtccacttattattaattcacacaaagtcacaacaataagaaagttatatgtacaaataaaatcacctaaaatagtaacgaaagatat 100  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13886538 agaatgaaatatgtacacttattattaattcacacaaagtcacaacaataagaaagttatatgtacaaataaaatcacctaaaatagtaacgaaagatat 13886637  T
Q  101 atacgacaaacatatattttgatatatggaaatttattatggtaaatttggggtgttacagaggacactcatgatcggccttagaggtggaggttacaag 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  13886638 atacgacaaacatatattttgatatatggaaatttattatggtaaatttggggtgttacagaggacactcataatcggccttagaggtggaggttacaag 13886737  T
Q  201 tgaaagatatactgagaatgcatttggaagtggatgtggagaaatcttagcttgaggtggagtcttccacaactgggattaaaaggaaacaaatggtggc 300  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  13886738 tgaaagatatactgagaatgcatttgaaagtggatgtggagaaatcttagcttgaggtggagtcttccacaattgggattaaaaggaaacaaatggtggc 13886837  T
Q  301 atcataatggtgcaactatggagtcattgtgtgttatcctttagttgagagcaataaattgttcgaaa 368  Q
    |||| |||| |||||||||| |||| |||||||||||||| |||||||||||||||||||||||||||    
T  13886838 atcagaatgatgcaactatgtagtcgttgtgtgttatcctctagttgagagcaataaattgttcgaaa 13886905  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 223 - 263
Target Start/End: Complemental strand, 43403212 - 43403172
Alignment:
Q  223 tttggaagtggatgtggagaaatcttagcttgaggtggagt 263  Q
    ||||||||| || |||||||||||| |||||||||||||||    
T  43403212 tttggaagttgaggtggagaaatctcagcttgaggtggagt 43403172  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 239 - 355
Target Start/End: Original strand, 16136232 - 16136347
Alignment:
Q  239 gagaaatcttagcttgaggtggagtcttccacaactgggattaaaaggaaacaaatggtggcatcataatggtgcaactatggagtcattgtgtgttatc 338  Q
    ||||||||| | |||||| ||||||||||||| |  |||| ||   ||| |||||||||||||| | |||| | |||||||| |||| |||||||||||     
T  16136232 gagaaatctcatcttgagatggagtcttccactatcgggactaggtggagacaaatggtggcataagaatg-tacaactatgtagtccttgtgtgttatg 16136330  T
Q  339 ctttagttgagagcaat 355  Q
    |||||||||| ||||||    
T  16136331 ctttagttgaaagcaat 16136347  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 221 - 360
Target Start/End: Complemental strand, 18198470 - 18198331
Alignment:
Q  221 catttggaagtggatgtggagaaatcttagcttgaggtggagtcttccacaactgggattaaaaggaaacaaatggtggcatcataatggtgcaactatg 320  Q
    |||||| |||| || ||||||||| || | ||||| ||||| |||||||| | ||||| ||  |||| | |||||||| || |  || ||| |||||||     
T  18198470 catttgaaagttgaggtggagaaaactcaacttgatgtggattcttccactagtgggactaggaggagaaaaatggtgtcaccgaaacggtacaactata 18198371  T
Q  321 gagtcattgtgtgttatcctttagttgagagcaataaatt 360  Q
    |||||||||||||||||  | ||||||||||||| |||||    
T  18198370 gagtcattgtgtgttatgttctagttgagagcaagaaatt 18198331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 220 - 270
Target Start/End: Original strand, 16676812 - 16676862
Alignment:
Q  220 gcatttggaagtggatgtggagaaatcttagcttgaggtggagtcttccac 270  Q
    |||||||||||| || ||||||||||| || ||||||||||||||||||||    
T  16676812 gcatttggaagttgaggtggagaaatcctaacttgaggtggagtcttccac 16676862  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 167 - 200
Target Start/End: Original strand, 28861818 - 28861851
Alignment:
Q  167 actcatgatcggccttagaggtggaggttacaag 200  Q
    ||||||||||||||||||||||||||||||||||    
T  28861818 actcatgatcggccttagaggtggaggttacaag 28861851  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 220 - 270
Target Start/End: Complemental strand, 7858589 - 7858539
Alignment:
Q  220 gcatttggaagtggatgtggagaaatcttagcttgaggtggagtcttccac 270  Q
    |||||||||||| ||  |||||||| |||||||||||||| ||||||||||    
T  7858589 gcatttggaagttgagatggagaaaacttagcttgaggtgtagtcttccac 7858539  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 221 - 354
Target Start/End: Original strand, 38281333 - 38281466
Alignment:
Q  221 catttggaagtggatgtggagaaatcttagcttgaggtggagtcttccacaactgggattaaaaggaaacaaatggtggcatcataatggtgcaactatg 320  Q
    ||||||||||| || ||||||||| || | |||||| | ||||||||||| | ||||| ||  || | || |||||||||  |||||||||  |||||||    
T  38281333 catttggaagttgaggtggagaaagctcaacttgagtttgagtcttccactagtgggactaggagtagactaatggtggccccataatggtaaaactatg 38281432  T
Q  321 gagtcattgtgtgttatcctttagttgagagcaa 354  Q
    ||||| ||| ||||| | || |||| ||||||||    
T  38281433 gagtccttgcgtgttgtgctctagtggagagcaa 38281466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 161
Target Start/End: Complemental strand, 5044237 - 5044095
Alignment:
Q  22 ttattaattcacacaaagtcacaacaataagaaagttatatgtacaaataaaatcacctaaaatagtaacgaaagatatatacgacaaacatatattttg 121  Q
    |||||||||||||  | ||||||| |||||| ||  || |||||||||||||||||| ||||||| |||| | |||| ||||  |  |||||||  |||     
T  5044237 ttattaattcacaagatgtcacaataataagcaaaatacatgtacaaataaaatcacttaaaataataactagagatttatatcatgaacatattatttt 5044138  T
Q  122 atatat---ggaaatttattatggtaaatttggggtgttacag 161  Q
    ||||||   | |||| |||||||| |||||| |||||||||||    
T  5044137 atatatatagaaaatatattatggaaaattttgggtgttacag 5044095  T

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Target: scaffold0009 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 160
Target Start/End: Complemental strand, 26799 - 26710
Alignment:
Q  72 aaatcacctaaaatagtaacgaaagatatatacgacaaacatatattttgatatat-ggaaatttattatggtaaatttggggtgttaca 160  Q
    ||||||| ||||||| |||| |||||| ||||| |  |||||||||||  |||||| | |||| |||||||| ||||||| |||||||||    
T  26799 aaatcacttaaaataataactaaagatttataccatgaacatatatttaaatatatagaaaatatattatggaaaatttgaggtgttaca 26710  T

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