View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10142_low_24 (Length: 348)
Name: NF10142_low_24
Description: NF10142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10142_low_24 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 36468457 - 36468679
Alignment:
| Q |
18 |
ctaactcccctaatatacacacgaaaaaccaaaaacccttatttatcttcaatggttttaatataaacaacttgtgcaactctttcacgatataaatgaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
36468457 |
ctaactcccctaatatacacacgaaaaaccaaaaacccttatttatcttcaatggtattaatataaacaacttctgcaactctttcacgatataaatgaa |
36468556 |
T |
|
| Q |
118 |
ttagaaatattttgtttgtaacctgattttaactctaactcatttaacttattttcataaacttgttttgctttcgttcaatcttcaattgttaaaaaca |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36468557 |
ttagaaatattttgtttgtaacctgattttaactctaactcatttaacttattttcataaacttgttttgctttcgttcaatcttcaattgttaaaaaca |
36468656 |
T |
|
| Q |
218 |
acttgtgcacaaattaaattctt |
240 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
36468657 |
acttgtgcacaaattaaattctt |
36468679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 257 - 327
Target Start/End: Original strand, 36469936 - 36470006
Alignment:
| Q |
257 |
aaaggaaatatacctttctcgctcatccaactttttaaataagagcgtcatttacacattttagcatctta |
327 |
Q |
| |
|
|||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36469936 |
aaaggaaatatatctttctcgctcagccaactttttaaataagagcgtcatttacacattttagcatctta |
36470006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University