View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10142_low_26 (Length: 315)
Name: NF10142_low_26
Description: NF10142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10142_low_26 |
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Alignment Details
Target: chr2 (Bit Score: 253; Significance: 1e-141; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 273
Target Start/End: Complemental strand, 12009679 - 12009407
Alignment:
| Q |
1 |
aggggagagttagagagcttagatttctacctctttttagggtttgttttattcattattttagaataaacttactaattttgtttgcttttcatctata |
100 |
Q |
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| T |
12009679 |
aggggagagttagagagcttagatttctacctctttttagggtttgttttattcattattttagaataaagttactaattttgtttgcttttcatctata |
12009580 |
T |
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| Q |
101 |
gcaatgattgtggaggcaactgaagatatttagctaaaagtgacgaattcaagcattacaacttacaagatatatcatgttgagatggtgatcaagaatg |
200 |
Q |
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| T |
12009579 |
gcaatgattgtggaggaaagtgaagaaatttagctaaaagtgacgaattcaagcattacaacttacaagatatatcatgttgagatggtgatcaagaatg |
12009480 |
T |
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| Q |
201 |
gtgcaaaagtgtgagaatgaataaaaggataaaaaccagtacatttcacagcaaggatcaaggttgcacgtaa |
273 |
Q |
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| T |
12009479 |
gtgcaaaagtgtgagaatgaataaaaggataaaaaccagtacatttcacagcagggatcaaggttgcacgtaa |
12009407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 273
Target Start/End: Complemental strand, 12003197 - 12002925
Alignment:
| Q |
1 |
aggggagagttagagagcttagatttctacctctttttagggtttgttttattcattattttagaataaacttactaattttgtttgcttttcatctata |
100 |
Q |
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|||||| |||||||||| || |||||||||||||||||| |||||||||||||| ||||||||||||||| |||||||||||||||| |||||||||||| |
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| T |
12003197 |
aggggaaagttagagagtttggatttctacctctttttaaggtttgttttattcgttattttagaataaagttactaattttgtttgtttttcatctata |
12003098 |
T |
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| Q |
101 |
gcaatgattgtggaggcaactgaagatatttagctaaaagtgacgaattcaagcattacaacttacaagatatatcatgttgagatggtgatcaagaatg |
200 |
Q |
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| T |
12003097 |
gcaatgattgtggaggaaagtgaagatatttagctaaaagtgaggaattcaagcattacaacttacaagatatatcatgttgagatggtgatcaagaatg |
12002998 |
T |
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| Q |
201 |
gtgcaaaagtgtgagaatgaataaaaggataaaaaccagtacatttcacagcaaggatcaaggttgcacgtaa |
273 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
12002997 |
gtgcaaaagtgtgagaatgaataaaaggataaaaaccagtacatttcacagcagggatcaaggttgcacgtaa |
12002925 |
T |
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