View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10142_low_29 (Length: 303)

Name: NF10142_low_29
Description: NF10142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10142_low_29
NF10142_low_29
[»] chr4 (1 HSPs)
chr4 (17-303)||(43763190-43763476)


Alignment Details
Target: chr4 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 17 - 303
Target Start/End: Complemental strand, 43763476 - 43763190
Alignment:
Q  17 acatcattgagaacacaccaggcaatcctgttattattgaaggactaaaagcaatttttagcgtaacatattcagatttcagcatttttataaaccaaat 116  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43763476 acataattgagaacacaccaggcaatcctgttattattgaaggactaaaagcaatttttagcgtaacatattcagatttcagcatttttataaaccaaat 43763377  T
Q  117 ttcactcagagtgtcttaagtcagtttcaatcagtgtgaactggtttcaacttaataaagcgattatatattttgatgaactactaattgaatactacca 216  Q
    |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43763376 ttcaatcagagtgtcttaattcagtttcaatcagtgtgaactggtttcaacttaataaagcgattatatattttgatgaactactaattgaatactacca 43763277  T
Q  217 tactcgcgagcaagagaaattaacttgccgagtactcctctgactcatagtaacagccaaatattgtacttgcactggaacgattta 303  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  43763276 tactcgcgagcaagagaaattaacttgccgagtactcctctgaatcatagtaacagccaaatattgtacttgcactggaacgattta 43763190  T

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