View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10142_low_3 (Length: 563)
Name: NF10142_low_3
Description: NF10142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10142_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 279; Significance: 1e-156; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 18 - 316
Target Start/End: Complemental strand, 28673122 - 28672824
Alignment:
| Q |
18 |
cacaagtgttcaacacagagttttagcaaaacatgttggcccaagaatttcaatcgcatccctttttagagcacatgaaaccgagggaatgccaaaaatg |
117 |
Q |
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| T |
28673122 |
cacaagtgttcaacacagagttttagcaaaacatgctggcccaagaatttcaatcgcatccctttttagagcacatgaatccgagggaatgccaaaagtg |
28673023 |
T |
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| Q |
118 |
attggtcaaatcaaggaactgttatctaaagaaaatctaccaatatatagagagacttctttgaaagagttcttggcacatcgttttacaaacggcattg |
217 |
Q |
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| T |
28673022 |
attggtccaatcaaggaactgttatctaaagaaaatctaccaatatatagagacacttctttgaaagagttcttggcacatcgttttacaaacggcattg |
28672923 |
T |
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| Q |
218 |
gattttctgcactttcaaccaacaggttgtgagttatgaacaaattgcatgcaatcttggatgtttgtttattcacaatcttggattttagcttgcaac |
316 |
Q |
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| T |
28672922 |
gattttctgcactttcaaccaacaggttgtgagttatgaacaaattgcatgcaatcttggatgtttgtttattcacaatcttggattttagcttgcaac |
28672824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 322 - 554
Target Start/End: Complemental strand, 28672769 - 28672544
Alignment:
| Q |
322 |
tcttccataattgacaaccatggtctcggtctcatgggtgctggtcaattttccgtaaaggtttatgcattagacactatcatgggcgaggttggattac |
421 |
Q |
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| T |
28672769 |
tcttccataattgacaaccatggtctcggtctcatgggtgctggtcaattttccgtaaaggtttatgcattagacactatcatgggcgaggttggattac |
28672670 |
T |
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| Q |
422 |
aaggtcgaatctggtgggcatcctgggccgcacgggtgatgctcatttaccgttgctcgcagagccggccgagaaggattattggtatatggtggtaact |
521 |
Q |
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| T |
28672669 |
agggtcgaatctggtgggcatcctgggccgcacgggtggtgctcatttaccattgctcgcagagccggctgagaaggattattggtatatggtagta--- |
28672573 |
T |
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| Q |
522 |
gtcctagtgtcttgatgacattttcttctctgc |
554 |
Q |
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| T |
28672572 |
----tagtgtcttgatgacattttcttctctgc |
28672544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 18 - 230
Target Start/End: Complemental strand, 28670058 - 28669837
Alignment:
| Q |
18 |
cacaagtgttcaacacagagttttagcaaaacatgttggcccaagaatttcaatcgcatccctttttagagcaca---tgaaacc------gagggaatg |
108 |
Q |
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| T |
28670058 |
cacaagtgttcaacacagagttttagcaaaccatgcaggcccaagaatttcagttgcaaccttttttagaacacaacatgattactcacatgagggtatg |
28669959 |
T |
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| Q |
109 |
ccaaaaatgattggtcaaatcaaggaactgttatctaaagaaaatctaccaatatatagagagacttctttgaaagagttcttggcacatcgttttacaa |
208 |
Q |
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| T |
28669958 |
gaaaaagtgataggaccaataaaggaattgttatctaaagaaaatccaccaatatacagagatacttctttgaaagagtatttggcatatcgttttgcaa |
28669859 |
T |
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| Q |
209 |
acggcattggattttctgcact |
230 |
Q |
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| T |
28669858 |
atggccttggagcttctgcact |
28669837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 21 - 275
Target Start/End: Complemental strand, 28639208 - 28638945
Alignment:
| Q |
21 |
aagtgttcaacacagagttttagcaaaacatgttggcccaagaatttcaatcgcatccctttttagagcaca---tgaaacc------gagggaatgcca |
111 |
Q |
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|||||||||||||||||||||||||||||||| || |||||||||||| | ||| |||| |||||| |||| ||| | ||||| || ||| |
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| T |
28639208 |
aagtgttcaacacagagttttagcaaaacatgcaggtccaagaatttcagttgcaaccctctttagaacacaacatgatcactctcctgagggcatacca |
28639109 |
T |
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| Q |
112 |
aaaatgattggtcaaatcaaggaactgttatctaaagaaaatctaccaatatatagagagacttctttgaaagagttcttggcacatcgttttacaaacg |
211 |
Q |
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| T |
28639108 |
aaattgattggaccaatcaaggaacttttatctgaagaaaacccaccaatatacaaagacacttctttgaaagagtacttgaaatatcgtttggcaagcg |
28639009 |
T |
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| Q |
212 |
gcattggattttctgcactttcaaccaacaggttgtgagttatgaacaaattgcatgcaatctt |
275 |
Q |
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| T |
28639008 |
gttttggagcttctgcactatcccctttcaagttgtgacttatgaacaaattgcatgcaatctt |
28638945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 21 - 275
Target Start/End: Complemental strand, 28647950 - 28647691
Alignment:
| Q |
21 |
aagtgttcaacacagagttttagcaaaacatgttggcccaagaatttcaatcgcatccctttttagagc---acatga------aaccgagggaatgcca |
111 |
Q |
| |
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||||||||||||||||||||||||||| |||| ||||||||||||||| | ||| || |||||||| | |||||| | ||||| || ||| |
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| T |
28647950 |
aagtgttcaacacagagttttagcaaaccatgcaggcccaagaatttcagttgcaaccttttttagaacacaacatgatcattctcctgagggcatacca |
28647851 |
T |
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| Q |
112 |
aaaatgattggtcaaatcaaggaactgttatctaaagaaaatctaccaatatatagagagacttctttgaaagagttcttggcacatcgttttacaaacg |
211 |
Q |
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||| ||||||| | |||||||||||| |||||||||||||| | |||||||| | ||| || ||||||||||||| |||| | ||||||| ||| || |
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| T |
28647850 |
aaagtgattggaccaatcaaggaacttttatctaaagaaaaccctccaatatacaaagatacatctttgaaagagtacttgaaatatcgtttggcaagcg |
28647751 |
T |
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| Q |
212 |
gcattggattttctgcactttcaaccaacaggttgtgagttatgaacaaattgcatgcaatctt |
275 |
Q |
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| T |
28647750 |
ggtttggagcttctgcactatcacctttcaagtt----gttatgaacaaattgcatgcaatctt |
28647691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 25 - 69
Target Start/End: Complemental strand, 28690123 - 28690079
Alignment:
| Q |
25 |
gttcaacacagagttttagcaaaacatgttggcccaagaatttca |
69 |
Q |
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| T |
28690123 |
gttcaacacagagttttagcaaagcatataggtccaagaatttca |
28690079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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