View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10142_low_33 (Length: 292)
Name: NF10142_low_33
Description: NF10142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10142_low_33 |
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Alignment Details
Target: chr7 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 14 - 276
Target Start/End: Original strand, 3787475 - 3787727
Alignment:
| Q |
14 |
gaatactcaatctcattttagagaggtggttctaagattactcaacatcatcttagagagacactagtaataatatttatcattattctagaggcggtgc |
113 |
Q |
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| T |
3787475 |
gaatactcaatctcattttagagaggtggttttaagattactcaacatcatcctagagagacactagtaataatatttatcattattctagaggcggtgc |
3787574 |
T |
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| Q |
114 |
taaaagtactcggaagcattggtgagatcattaaaatggttgatggataaattaataccatcattgttttgaagtcaatgggaagaattgaggtgaaata |
213 |
Q |
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| T |
3787575 |
taaaagtactcggaagcattggtgagatcattaa----------ggataaattaataccatcattgttttgaagtcaatgggaagaattgaggtgaaata |
3787664 |
T |
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| Q |
214 |
ctgacttaaaaacaagggtatttcgtctatttataaattgtccataaatagtgacaatctatg |
276 |
Q |
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| T |
3787665 |
ctgacttaaaaacaagggtatttcgtctatttataacttgtccataaatagtgacaatctatg |
3787727 |
T |
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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 202
Target Start/End: Original strand, 34036762 - 34036811
Alignment:
| Q |
153 |
ttgatggataaattaataccatcattgttttgaagtcaatgggaagaatt |
202 |
Q |
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| T |
34036762 |
ttgatggttaaattaacactatcactgttttgaagtcaatgtgaagaatt |
34036811 |
T |
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