View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10142_low_38 (Length: 271)
Name: NF10142_low_38
Description: NF10142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10142_low_38 |
 | |
|
| [»] scaffold0041 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0041 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 78306 - 78559
Alignment:
| Q |
1 |
caatgtctatgattaataaggaagaacaaacaacccttcaaagcttacttgataatgaataatgaaagtgaccttaccttaccttatcctttaaaatata |
100 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
78306 |
caatgtttatgattaataaggaagaacaaacaacccttcaaagcttactt-ataatgaataatgatagtgaccttaccttaccttatcctttaaaatata |
78404 |
T |
|
| Q |
101 |
aaatattggactgaaaatcatagcttctgtggctctgatcaactatatggttcaggttatatgccattttttccactacttttgtttgaacagtggtgtg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
78405 |
aaatattggactgaaaatcatagcttctgtggctctgatcaactatatggttcaggttatatgccattttttccactacttttgtttgaacagtggtgtg |
78504 |
T |
|
| Q |
201 |
attctgcaaaacttgcttcatttgataatgagggaaagtaatgaaaaggaacttt |
255 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
78505 |
attctgcaaaacttgcttcatttgataatgagggaaagtaaagaaaaggaacttt |
78559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 40887978 - 40887725
Alignment:
| Q |
1 |
caatgtctatgattaataaggaagaacaaacaacccttcaaagcttacttgataatgaataatgaaagtgaccttaccttaccttatcctttaaaatata |
100 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
40887978 |
caatgtttatgattaataaggaagaacaaacaacccttcaaagcttactt-ataatgaataatgatagtgaccttaccttaccttatcctttaaaatata |
40887880 |
T |
|
| Q |
101 |
aaatattggactgaaaatcatagcttctgtggctctgatcaactatatggttcaggttatatgccattttttccactacttttgtttgaacagtggtgtg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40887879 |
aaatattggactgaaaatcatagcttctgtggctctgatcaactatatggttcaggttatatgccattttttccactacttttgtttgaacagtggtgtg |
40887780 |
T |
|
| Q |
201 |
attctgcaaaacttgcttcatttgataatgagggaaagtaatgaaaaggaacttt |
255 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
40887779 |
attctgcaaaacttgcttcatttgataatgagggaaagtaaagaaaaggaacttt |
40887725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 89; Significance: 6e-43; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 8 - 140
Target Start/End: Original strand, 14905107 - 14905238
Alignment:
| Q |
8 |
tatgattaataaggaagaacaaacaacccttcaaagcttacttgata---atgaataatgaaagtgaccttaccttaccttatcctttaaaatataaaat |
104 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
14905107 |
tatgattaataaggaagaacaa----cccttcaaagcttacttgatactaatgaataatgatagtgaccttaccttaccttatcccttaaaatataaaat |
14905202 |
T |
|
| Q |
105 |
attggactgaaaatcatagcttctgtggctctgatc |
140 |
Q |
| |
|
|||||||||||| ||||||||| ||||||||||||| |
|
|
| T |
14905203 |
attggactgaaagtcatagcttttgtggctctgatc |
14905238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University