View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10142_low_40 (Length: 268)

Name: NF10142_low_40
Description: NF10142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10142_low_40
NF10142_low_40
[»] chr8 (7 HSPs)
chr8 (3-178)||(25495060-25495235)
chr8 (3-160)||(25650893-25651055)
chr8 (5-132)||(25618170-25618297)
chr8 (3-78)||(25359124-25359199)
chr8 (3-78)||(25399157-25399232)
chr8 (181-243)||(25495299-25495361)
chr8 (181-243)||(25651248-25651310)
[»] scaffold0466 (2 HSPs)
scaffold0466 (3-178)||(6117-6296)
scaffold0466 (181-238)||(5996-6053)
[»] scaffold1041 (2 HSPs)
scaffold1041 (92-178)||(464-549)
scaffold1041 (181-243)||(347-409)
[»] chr1 (1 HSPs)
chr1 (3-108)||(32973413-32973518)
[»] chr3 (1 HSPs)
chr3 (40-120)||(15673459-15673539)


Alignment Details
Target: chr8 (Bit Score: 157; Significance: 1e-83; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 3 - 178
Target Start/End: Original strand, 25495060 - 25495235
Alignment:
Q  3 acacttattgttggagatctattagttaattcgactacacacgccacaacttcaaccc-acaattattttggtagtttcttacttttgagcatgattcga 101  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  25495060 acacttattgttggagatctattagttaattcgactacacacgccacaacttcaaccccacaattattttggtagtttcttacttttgagcatgattcga 25495159  T
Q  102 gtcatatcaagaattgttctaattttccttcctaaaagtcatggttccaaccataatttggttatgttttgttagtt 178  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||    
T  25495160 gtcatatcaagaattgttctaattttccttcctaaaaatcatggttccaaccataattt-gttatgttttgttagtt 25495235  T

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Target: chr8; HSP #2
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 3 - 160
Target Start/End: Original strand, 25650893 - 25651055
Alignment:
Q  3 acacttattgttggagatctattagttaattcgactacacacgccacaacttcaacccacaattattttggtagtttcttacttttgagcatgattcg-- 100  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  25650893 acacttattgttggagatctattagttaattagactacacacgccacaacttcaacccacaattattttggtagtttcttacttttgagcatgattcgag 25650992  T
Q  101 ---agtcatatcaagaattgttctaattttccttcctaaaagtcatggttccaaccataattt 160  Q
       || |||||||||||||||||||||||||||||||| ||  |||||||| |||||||||||    
T  25650993 ccaagccatatcaagaattgttctaattttccttcctacaaagcatggttcgaaccataattt 25651055  T

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Target: chr8; HSP #3
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 5 - 132
Target Start/End: Original strand, 25618170 - 25618297
Alignment:
Q  5 acttattgttggagatctattagttaattcgactacacacgccacaacttcaacccacaattattttggtagtttcttacttttgagcatgattcgagtc 104  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |    
T  25618170 acttattgttggagatctattagttaattagactacacacgccacaacttaaacccacaattattttggtagtttcttactttggagcatgattcgagcc 25618269  T
Q  105 atatcaagaattgttctaattttccttc 132  Q
    ||||||| ||||||||||||||||||||    
T  25618270 atatcaacaattgttctaattttccttc 25618297  T

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Target: chr8; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 3 - 78
Target Start/End: Original strand, 25359124 - 25359199
Alignment:
Q  3 acacttattgttggagatctattagttaattcgactacacacgccacaacttcaacccacaattattttggtagtt 78  Q
    ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||    
T  25359124 acactaattgttggagatctattagttaattagactacacacgccacaacttcaaccaacaattattttggtagtt 25359199  T

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Target: chr8; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 3 - 78
Target Start/End: Original strand, 25399157 - 25399232
Alignment:
Q  3 acacttattgttggagatctattagttaattcgactacacacgccacaacttcaacccacaattattttggtagtt 78  Q
    ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| | ||||||||||||||||    
T  25399157 acactaattgttggagatctattagttaattagactacacacgccacaacttcaaccaataattattttggtagtt 25399232  T

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Target: chr8; HSP #6
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 181 - 243
Target Start/End: Original strand, 25495299 - 25495361
Alignment:
Q  181 ggtacatccatatagcttttatctgcaagctggttctctcgattgtacctttgttattcttga 243  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25495299 ggtacgtccatatagcttttatctgcaagctggttctctcgattgtacctttgttattcttga 25495361  T

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Target: chr8; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 181 - 243
Target Start/End: Original strand, 25651248 - 25651310
Alignment:
Q  181 ggtacatccatatagcttttatctgcaagctggttctctcgattgtacctttgttattcttga 243  Q
    ||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  25651248 ggtacgtccatatagcttttatctgcaagctggttctctcgatagtacctttgttattcttga 25651310  T

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Target: scaffold0466 (Bit Score: 141; Significance: 5e-74; HSPs: 2)
Name: scaffold0466
Description:

Target: scaffold0466; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 3 - 178
Target Start/End: Complemental strand, 6296 - 6117
Alignment:
Q  3 acacttattgttggagatctattagttaattcgactacacacgccacaacttcaacccacaattattttggtagtttcttacttttgagcatgattcg-- 100  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  6296 acacttattgttggagatctattagttaattagactacacacgccacaacttcaacccacaattattttggtagtttcttacttttgagcatgattcgag 6197  T
Q  101 ---agtcatatcaagaattgttctaattttccttcctaaaagtcatggttccaaccataatttggttatgttttgttagtt 178  Q
       || ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||    
T  6196 ccaagccatatcaagaattgttctaattttccttcctaaaaatcatggttccaaccataattt-gttatgttttgttagtt 6117  T

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Target: scaffold0466; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 181 - 238
Target Start/End: Complemental strand, 6053 - 5996
Alignment:
Q  181 ggtacatccatatagcttttatctgcaagctggttctctcgattgtacctttgttatt 238  Q
    ||||| ||||||||||||||||||| |||||||||||||||||| |||||||||||||    
T  6053 ggtacgtccatatagcttttatctgtaagctggttctctcgattttacctttgttatt 5996  T

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Target: scaffold1041 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: scaffold1041
Description:

Target: scaffold1041; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 92 - 178
Target Start/End: Complemental strand, 549 - 464
Alignment:
Q  92 catgattcgagtcatatcaagaattgttctaattttccttcctaaaagtcatggttccaaccataatttggttatgttttgttagtt 178  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||   |||||||  |||||||||| ||| |||||||||||||    
T  549 catgattcgagccatatcaagaattgttctaattttccttcctaaaaagaatggttcggaccataattt-gttctgttttgttagtt 464  T

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Target: scaffold1041; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 181 - 243
Target Start/End: Complemental strand, 409 - 347
Alignment:
Q  181 ggtacatccatatagcttttatctgcaagctggttctctcgattgtacctttgttattcttga 243  Q
    ||||| |||||||||||||||||||||||||||||||||| ||  || |||||||||||||||    
T  409 ggtacgtccatatagcttttatctgcaagctggttctctccataatagctttgttattcttga 347  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 3 - 108
Target Start/End: Complemental strand, 32973518 - 32973413
Alignment:
Q  3 acacttattgttggagatctattagttaattcgactacacacgccacaacttcaacccacaattattttggtagtttcttacttttgagcatgattcgag 102  Q
    |||||| |||||||||||||||||| ||  | |||| |||| | ||||||||||||||| |||| |||||||||||||||  |||||| || | ||||||    
T  32973518 acacttcttgttggagatctattagatagatagactgcacatgtcacaacttcaacccaaaattcttttggtagtttcttgattttgaccaagcttcgag 32973419  T
Q  103 tcatat 108  Q
     |||||    
T  32973418 ccatat 32973413  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 40 - 120
Target Start/End: Original strand, 15673459 - 15673539
Alignment:
Q  40 cacacgccacaacttcaacccacaattattttggtagtttcttacttttgagcatgattcgagtcatatcaagaattgttc 120  Q
    ||||| ||| ||||||| |||| || | ||||||||| |||||||||||||||||| |||||| ||||||||| |||||||    
T  15673459 cacacaccaaaacttcagcccaaaactcttttggtagattcttacttttgagcatgcttcgagccatatcaagtattgttc 15673539  T

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