View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10142_low_41 (Length: 266)
Name: NF10142_low_41
Description: NF10142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10142_low_41 |
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Alignment Details
Target: chr4 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 43763131 - 43762881
Alignment:
| Q |
1 |
tactgttacaaatatatcgtgaaaatgcaccctaaaaaagcaataaaatgaaaatacttgctcctcttatcggatcgcataaacaacacctgtcttccaa |
100 |
Q |
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| T |
43763131 |
tactgttacaaatatatcatgaaaatgcaccctaaaaaagcaataaaatgaaaatacttactcctcttatcggatcgcataaacaacacctgtcttccaa |
43763032 |
T |
|
| Q |
101 |
gcagacgaatttggctcttcaatattgcctctatatggtattactcttaaaagagctgatttcaatttcaacccactaatataattcccctatctcctgc |
200 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43763031 |
gcagacgaatttggctcttcaatattgcatctatatggtattactcttaaaagagctgatttcaatttcaacccactaatataattcccctatctcctgc |
43762932 |
T |
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| Q |
201 |
ataattcctcttagattcctacataccaggcataagaagaaacaaggaaat |
251 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43762931 |
ataattcctcttagattcctacataccaggcataagaagaaacaaggaaat |
43762881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 107 - 220
Target Start/End: Complemental strand, 43757240 - 43757126
Alignment:
| Q |
107 |
gaatttggctcttcaatattgcctctatatggtattactcttaaaa-gagctgatttcaatttcaacccactaatataattcccctatctcctgcataat |
205 |
Q |
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||||||| ||||||| ||||||||||||||||||||| ||||||| ||| ||||||||||||||||||| ||||||||||||| ||||||| |||| | |
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| T |
43757240 |
gaatttgactcttcactattgcctctatatggtattagccttaaaatgagttgatttcaatttcaacccagtaatataattcccttatctccaccatagt |
43757141 |
T |
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| Q |
206 |
tcctcttagattcct |
220 |
Q |
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|| |||||||||||| |
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| T |
43757140 |
tcttcttagattcct |
43757126 |
T |
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