View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10142_low_42 (Length: 266)
Name: NF10142_low_42
Description: NF10142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10142_low_42 |
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Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 16469884 - 16470129
Alignment:
| Q |
1 |
ttggaggctgttcaatacgagtta----tctgagaggaaacatgttcatatgatacaatctgaccttttgtactttgttgcaatgatggttctataggtg |
96 |
Q |
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| T |
16469884 |
ttggaggctgttcaatacgagttaattatctgagaggaaacatgttcatatgatacaatctgaccttttgtactttgttgcaatgatggttctataggtg |
16469983 |
T |
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| Q |
97 |
tgatgattttaacatcttgatctgcactaggaacgacatgttctgcatgagatataactggtattacattagtaatatgaggcacttcaaatgctttcga |
196 |
Q |
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| T |
16469984 |
tgatgattgtaacatcttgatctgcactagggacgacatgttctgcatgagatataactggtattatattagtaatatgaggtacttcaaatgctttcga |
16470083 |
T |
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| Q |
197 |
gggcccaatcccatttggttatgtttttcgacatatttctgagtag |
242 |
Q |
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| T |
16470084 |
gggcccaatcccatttggttatgtttttcgacatatttctgagtag |
16470129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 9 - 92
Target Start/End: Complemental strand, 27521215 - 27521132
Alignment:
| Q |
9 |
tgttcaatacgagttatctgagaggaaacatgttcatatgatacaatctgaccttttgtactttgttgcaatgatggttctata |
92 |
Q |
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||||||||||||| |||| ||||| |||| |||||||||||| ||||||||||||||| || |||||||||||||| |||| |
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| T |
27521215 |
tgttcaatacgagctatccaagaggcaacaagttcatatgatatggtctgaccttttgtaccttattgcaatgatggttatata |
27521132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 12 - 81
Target Start/End: Original strand, 6071579 - 6071648
Alignment:
| Q |
12 |
tcaatacgagttatctgagaggaaacatgttcatatgatacaatctgaccttttgtactttgttgcaatg |
81 |
Q |
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|||| ||||| ||| || |||| ||| ||||||||||||||| | ||||||||||||| ||||||||||| |
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| T |
6071579 |
tcaagacgagctatttgggaggcaacgtgttcatatgatacagtgtgaccttttgtaccttgttgcaatg |
6071648 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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