View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10142_low_43 (Length: 264)

Name: NF10142_low_43
Description: NF10142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10142_low_43
NF10142_low_43
[»] chr6 (9 HSPs)
chr6 (1-246)||(2369034-2369279)
chr6 (1-245)||(2363289-2363533)
chr6 (1-246)||(2307523-2307768)
chr6 (25-246)||(2340204-2340425)
chr6 (33-246)||(2351657-2351870)
chr6 (87-234)||(2261160-2261307)
chr6 (3-231)||(2357988-2358216)
chr6 (171-246)||(14711303-14711378)
chr6 (171-236)||(14753374-14753439)
[»] chr3 (1 HSPs)
chr3 (10-236)||(4305996-4306222)
[»] chr4 (1 HSPs)
chr4 (25-246)||(5804059-5804280)
[»] scaffold0408 (1 HSPs)
scaffold0408 (171-236)||(624-689)


Alignment Details
Target: chr6 (Bit Score: 230; Significance: 1e-127; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 2369279 - 2369034
Alignment:
Q  1 tcacataatttcatagcaattcgaagacaaacgtggcttaataagaatctcaagaggagttgttttggtgttggttaatccaaaagtttcagtcatatca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2369279 tcacataatttcatagcaattcgaagacaaacgtggcttaataagaatctcaagaggagttgttttggtgttggttaatccaaaagtttcagtcatatca 2369180  T
Q  101 ataggttcacttgatggatttacgatttcaaaggaatgcaaaaaactagccaaagttaaatgcaccatttgaaggccaaatgacattcctgggcaaattc 200  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |    
T  2369179 ataggttcacttgatggatttaagatttcaaaggaatgcaaaaaactagccaaagttaaatgcaccatttgaaggccaaatgacattccagggcaaatcc 2369080  T
Q  201 ttctaccacctccaaatggtaatagctcaaaatgattacctctaac 246  Q
    |||||||||||||||||||||||||||||||||||| |||||||||    
T  2369079 ttctaccacctccaaatggtaatagctcaaaatgatgacctctaac 2369034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 2363533 - 2363289
Alignment:
Q  1 tcacataatttcatagcaattcgaagacaaacgtggcttaataagaatctcaagaggagttgttttggtgttggttaatccaaaagtttcagtcatatca 100  Q
    ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  2363533 tcacataatttcataacaattcgaagacaaacgtggctttataagaatctcaagaggagttgttttggtgttgcttaatccaaaagtttcattcatatca 2363434  T
Q  101 ataggttcacttgatggatttacgatttcaaaggaatgcaaaaaactagccaaagttaaatgcaccatttgaaggccaaatgacattcctgggcaaattc 200  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| || ||||| ||||| || ||||| |    
T  2363433 ataggttcacttgatggatttaagatttcaaaggaatgcaaaaaactagccaaagttaaatgcagcatttgaagccctaatgatattccgggacaaatcc 2363334  T
Q  201 ttctaccacctccaaatggtaatagctcaaaatgattacctctaa 245  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  2363333 ttctaccacctccaaatggtaatagctcaaaatgattacctctaa 2363289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 2307768 - 2307523
Alignment:
Q  1 tcacataatttcatagcaattcgaagacaaacgtggcttaataagaatctcaagaggagttgttttggtgttggttaatccaaaagtttcagtcatatca 100  Q
    |||||| |||||||| |||||   ||||||| |||| ||||| ||||||| ||||||||| | ||| ||||| ||||||||||| | |||| ||||||||    
T  2307768 tcacatgatttcataacaattgatagacaaatgtggtttaatgagaatcttaagaggagtagctttagtgtttgttaatccaaaggattcactcatatca 2307669  T
Q  101 ataggttcacttgatggatttacgatttcaaaggaatgcaaaaaactagccaaagttaaatgcaccatttgaaggccaaatgacattcctgggcaaattc 200  Q
    | | |||||   | |||||||| ||| ||||||||||||||||||||||| | | | ||||||| ||||||||| |||| ||| ||||| ||||| || |    
T  2307668 acaagttcaggggttggatttaagatatcaaaggaatgcaaaaaactagctagaatgaaatgcagcatttgaagtccaagtgatattccagggcatatcc 2307569  T
Q  201 ttctaccacctccaaatggtaatagctcaaaatgattacctctaac 246  Q
    ||||||||| ||||||||| |||||| |||||| | |||| |||||    
T  2307568 ttctaccacttccaaatggcaatagcacaaaattactacccctaac 2307523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 25 - 246
Target Start/End: Complemental strand, 2340425 - 2340204
Alignment:
Q  25 agacaaacgtggcttaataagaatctcaagaggagttgttttggtgttggttaatccaaaagtttcagtcatatcaataggttcacttgatggatttacg 124  Q
    |||||||||||| ||||| ||||||||||| ||||| | |||||  || ||| ||||||| | |||| ||||||||| ||  |||  || |||||||| |    
T  2340425 agacaaacgtggtttaatgagaatctcaagtggagtagctttggaattcgttgatccaaaggcttcactcatatcaacagcatcaggtgttggatttaag 2340326  T
Q  125 atttcaaaggaatgcaaaaaactagccaaagttaaatgcaccatttgaaggccaaatgacattcctgggcaaattcttctaccacctccaaatggtaata 224  Q
    || ||||||||||||||||||||||| |  || ||||||| ||||||||| ||||| || ||||| || ||  | |||||||||| ||||||||||||||    
T  2340325 atatcaaaggaatgcaaaaaactagctagggtgaaatgcagcatttgaagtccaaacgatattccaggacatttccttctaccacttccaaatggtaata 2340226  T
Q  225 gctcaaaatgattacctctaac 246  Q
    | ||||||||||||||||||||    
T  2340225 gttcaaaatgattacctctaac 2340204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 33 - 246
Target Start/End: Complemental strand, 2351870 - 2351657
Alignment:
Q  33 gtggcttaataagaatctcaagaggagttgttttggtgttggttaatccaaaagtttcagtcatatcaataggttcacttgatggatttacgatttcaaa 132  Q
    |||| ||||| ||||||||||| ||||| | ||||||||| | |||||||||   |||||||||||||| | || |   || |||||||| ||| |||||    
T  2351870 gtggtttaatgagaatctcaagtggagtagctttggtgtttgctaatccaaattcttcagtcatatcaacaagtccgggtgttggatttaagatatcaaa 2351771  T
Q  133 ggaatgcaaaaaactagccaaagttaaatgcaccatttgaaggccaaatgacattcctgggcaaattcttctaccacctccaaatggtaatagctcaaaa 232  Q
    ||||||||||||||| || | ||| |||||||| |||||||| ||||| || ||| | || ||  | |||||||||| ||||||||||| ||| ||||||    
T  2351770 ggaatgcaaaaaacttgctagagtgaaatgcacaatttgaagtccaaaagatattgcaggacacttccttctaccacttccaaatggtagtagttcaaaa 2351671  T
Q  233 tgattacctctaac 246  Q
    ||||||||||||||    
T  2351670 tgattacctctaac 2351657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 87 - 234
Target Start/End: Original strand, 2261160 - 2261307
Alignment:
Q  87 tttcagtcatatcaataggttcacttgatggatttacgatttcaaaggaatgcaaaaaactagccaaagttaaatgcaccatttgaaggccaaatgacat 186  Q
    ||||||||||||||| ||||||||| |||  |||||| ||||||||||| || |||||| |||||||||||||||| | ||| ||||| ||||| || ||    
T  2261160 tttcagtcatatcaacaggttcactagatccatttacaatttcaaaggagtgtaaaaaattagccaaagttaaatgaatcatatgaagaccaaaagatat 2261259  T
Q  187 tcctgggcaaattcttctaccacctccaaatggtaatagctcaaaatg 234  Q
    |||||| || || |||||||||| |||||||||||| | |||||||||    
T  2261260 tcctggacatatccttctaccacttccaaatggtaacaactcaaaatg 2261307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 3 - 231
Target Start/End: Complemental strand, 2358216 - 2357988
Alignment:
Q  3 acataatttcatagcaattcgaagacaaacgtggcttaataagaatctcaagaggagttgttttggtgttggttaatccaaaagtttcagtcatatcaat 102  Q
    ||||| |||| ||||||||   |||||||| ||| ||||  ||||||||||| || || | ||||| |   || ||||||||   ||| |||||||||||    
T  2358216 acatagtttcgtagcaattaacagacaaacatggtttaaccagaatctcaagtggggtagctttggagaccgtcaatccaaagacttctgtcatatcaat 2358117  T
Q  103 aggttcacttgatggatttacgatttcaaaggaatgcaaaaaactagccaaagttaaatgcaccatttgaaggccaaatgacattcctgggcaaattctt 202  Q
    ||| ||||| |||| ||  | ||||||||| |||||||||||| |||||||| ||||||||| |||||  || ||||| || ||| | || ||||| |||    
T  2358116 aggctcactcgatgaatacaagatttcaaatgaatgcaaaaaattagccaaaattaaatgcatcatttctagtccaaaagatatttcaggacaaatcctt 2358017  T
Q  203 ctaccacctccaaatggtaatagctcaaa 231  Q
    ||||||| |||||||||||| | ||||||    
T  2358016 ctaccacttccaaatggtaacaactcaaa 2357988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 171 - 246
Target Start/End: Original strand, 14711303 - 14711378
Alignment:
Q  171 gaaggccaaatgacattcctgggcaaattcttctaccacctccaaatggtaatagctcaaaatgattacctctaac 246  Q
    ||||| |||| || ||||| || || || ||||| |||| |||||||||||| |||||||||||||||||||||||    
T  14711303 gaagggcaaaggatattccaggacacatccttcttccacttccaaatggtaaaagctcaaaatgattacctctaac 14711378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 171 - 236
Target Start/End: Original strand, 14753374 - 14753439
Alignment:
Q  171 gaaggccaaatgacattcctgggcaaattcttctaccacctccaaatggtaatagctcaaaatgat 236  Q
    |||||||||| || ||||| || ||||| ||||| |||| |||||||||||| | |||||||||||    
T  14753374 gaaggccaaaggatattccaggacaaatccttcttccacttccaaatggtaaaaactcaaaatgat 14753439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 119; Significance: 7e-61; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 10 - 236
Target Start/End: Complemental strand, 4306222 - 4305996
Alignment:
Q  10 ttcatagcaattcgaagacaaacgtggcttaataagaatctcaagaggagttgttttggtgttggttaatccaaaagtttcagtcatatcaataggttca 109  Q
    |||||| ||||| |||| |||||| ||||||||||||||||| || |||||||  |||  |||||| | |||||||| ||||||||||||||||||||||    
T  4306222 ttcataacaattagaaggcaaacgaggcttaataagaatctctagtggagttgccttgtggttggtgattccaaaagcttcagtcatatcaataggttca 4306123  T
Q  110 cttgatggatttacgatttcaaaggaatgcaaaaaactagccaaagttaaatgcaccatttgaaggccaaatgacattcctgggcaaattcttctaccac 209  Q
      |||||  |||  |||||||||||||||||||||||||||||||| |||||||||||||||||||||| | || |||||||| ||||| ||||||||||    
T  4306122 gctgatgcctttgagatttcaaaggaatgcaaaaaactagccaaagataaatgcaccatttgaaggccataagatattcctggacaaatccttctaccac 4306023  T
Q  210 ctccaaatggtaatagctcaaaatgat 236  Q
     |||||||||||||| |||||||||||    
T  4306022 ttccaaatggtaataactcaaaatgat 4305996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 82; Significance: 8e-39; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 25 - 246
Target Start/End: Original strand, 5804059 - 5804280
Alignment:
Q  25 agacaaacgtggcttaataagaatctcaagaggagttgttttggtgttggttaatccaaaagtttcagtcatatcaataggttcacttgatggatttacg 124  Q
    |||||||||||| ||||| ||||| ||||| ||||| | |||| | || |||||||||||   |||||||||||||||| |||||  || |||||||| |    
T  5804059 agacaaacgtggtttaatgagaatttcaagtggagtagctttgctatttgttaatccaaattcttcagtcatatcaataagttcaggtgttggatttaag 5804158  T
Q  125 atttcaaaggaatgcaaaaaactagccaaagttaaatgcaccatttgaaggccaaatgacattcctgggcaaattcttctaccacctccaaatggtaata 224  Q
    || ||||||||||||||||||||||| | ||| ||||||||||||||||| |||||  | ||||| || ||  | |||||||||| ||||||||||  ||    
T  5804159 atatcaaaggaatgcaaaaaactagctagagtaaaatgcaccatttgaagtccaaaacatattccaggacatttccttctaccacttccaaatggttgta 5804258  T
Q  225 gctcaaaatgattacctctaac 246  Q
    | |||||||||||||| |||||    
T  5804259 gttcaaaatgattacccctaac 5804280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0408 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0408
Description:

Target: scaffold0408; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 171 - 236
Target Start/End: Complemental strand, 689 - 624
Alignment:
Q  171 gaaggccaaatgacattcctgggcaaattcttctaccacctccaaatggtaatagctcaaaatgat 236  Q
    |||||||||| || ||||| || ||||| ||||| |||| |||||||||||| | |||||||||||    
T  689 gaaggccaaaggatattccaggacaaatccttcttccacttccaaatggtaaaaactcaaaatgat 624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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