View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10142_low_45 (Length: 258)

Name: NF10142_low_45
Description: NF10142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10142_low_45
NF10142_low_45
[»] chr6 (2 HSPs)
chr6 (11-242)||(29487808-29488040)
chr6 (9-53)||(31812039-31812083)
[»] chr2 (4 HSPs)
chr2 (4-53)||(43985029-43985078)
chr2 (16-53)||(3067405-3067442)
chr2 (8-45)||(6988114-6988151)
chr2 (13-53)||(1810668-1810708)
[»] chr7 (3 HSPs)
chr7 (9-53)||(48470044-48470088)
chr7 (9-45)||(44241859-44241895)
chr7 (9-53)||(46104593-46104637)
[»] chr4 (4 HSPs)
chr4 (16-53)||(18011878-18011915)
chr4 (8-53)||(30162732-30162777)
chr4 (9-53)||(28615334-28615378)
chr4 (9-53)||(47800623-47800667)
[»] chr1 (3 HSPs)
chr1 (8-53)||(4576804-4576849)
chr1 (9-53)||(11893619-11893662)
chr1 (9-53)||(26779951-26779995)
[»] chr8 (2 HSPs)
chr8 (9-53)||(27754404-27754448)
chr8 (9-53)||(28769365-28769409)
[»] chr5 (1 HSPs)
chr5 (9-53)||(10272457-10272501)


Alignment Details
Target: chr6 (Bit Score: 221; Significance: 1e-122; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 11 - 242
Target Start/End: Original strand, 29487808 - 29488040
Alignment:
Q  11 taagttgttttcataagctattttgaatagtttatgaaaataatcataagatatcttacggagtt-aaagaaatgcttataaaaacgaaagagcttttaa 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  29487808 taagttgttttcataagctattttgaatagtttatgaaaataatcataagatatcttacggagtttaaagaaatgcttataaaaacgaaagagcttttaa 29487907  T
Q  110 ggaaataagctcaaatcaacttataaacactagcgaaaaaccacacactaatatgctcgtctatctgttatatatatttcacatatataaaaagatactc 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29487908 ggaaataagctcaaatcaacttataaacactagcgaaaaaccacacactaatatgctcgtctatctgttatatatatttcacatatataaaaagatactc 29488007  T
Q  210 ctttcaattttgtacgagtattttaaaaaattg 242  Q
    ||| |||||||||||||||||||||||||||||    
T  29488008 cttccaattttgtacgagtattttaaaaaattg 29488040  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 31812083 - 31812039
Alignment:
Q  9 tataagttgttttcataagctattttgaatagtttatgaaaataa 53  Q
    ||||||||||||||||||||||| ||| | || ||||||||||||    
T  31812083 tataagttgttttcataagctatcttggagagcttatgaaaataa 31812039  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 53
Target Start/End: Complemental strand, 43985078 - 43985029
Alignment:
Q  4 taaattataagttgttttcataagctattttgaatagtttatgaaaataa 53  Q
    |||||||||||||||||||||||||||| ||||| || ||||||||||||    
T  43985078 taaattataagttgttttcataagctatcttgaagagcttatgaaaataa 43985029  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 3067442 - 3067405
Alignment:
Q  16 tgttttcataagctattttgaatagtttatgaaaataa 53  Q
    |||||||||||||||| ||||| |||||||||||||||    
T  3067442 tgttttcataagctatcttgaagagtttatgaaaataa 3067405  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 45
Target Start/End: Original strand, 6988114 - 6988151
Alignment:
Q  8 ttataagttgttttcataagctattttgaatagtttat 45  Q
    |||||||||||||||||||||||| ||||| |||||||    
T  6988114 ttataagttgttttcataagctatcttgaagagtttat 6988151  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 1810668 - 1810708
Alignment:
Q  13 agttgttttcataagctattttgaatagtttatgaaaataa 53  Q
    ||||||||| ||||||||| ||||| |||||||||||||||    
T  1810668 agttgtttttataagctatcttgaagagtttatgaaaataa 1810708  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 48470044 - 48470088
Alignment:
Q  9 tataagttgttttcataagctattttgaatagtttatgaaaataa 53  Q
    |||||||||||||||||||||||||||||||  ||||||| ||||    
T  48470044 tataagttgttttcataagctattttgaataacttatgaacataa 48470088  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 45
Target Start/End: Original strand, 44241859 - 44241895
Alignment:
Q  9 tataagttgttttcataagctattttgaatagtttat 45  Q
    ||||||||||||||||||||||| |||||||| ||||    
T  44241859 tataagttgttttcataagctatcttgaatagcttat 44241895  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 46104637 - 46104593
Alignment:
Q  9 tataagttgttttcataagctattttgaatagtttatgaaaataa 53  Q
    |||||||||||||||||||||||  |||| || ||||||||||||    
T  46104637 tataagttgttttcataagctatgctgaagagcttatgaaaataa 46104593  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 18011878 - 18011915
Alignment:
Q  16 tgttttcataagctattttgaatagtttatgaaaataa 53  Q
    |||||||||||||||| ||||| |||||||||||||||    
T  18011878 tgttttcataagctatcttgaagagtttatgaaaataa 18011915  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 53
Target Start/End: Original strand, 30162732 - 30162777
Alignment:
Q  8 ttataagttgttttcataagctattttgaatagtttatgaaaataa 53  Q
    |||||| || ||||||||||||||| |||| |||||||||||||||    
T  30162732 ttataaatttttttcataagctattatgaaaagtttatgaaaataa 30162777  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 28615334 - 28615378
Alignment:
Q  9 tataagttgttttcataagctattttgaatagtttatgaaaataa 53  Q
    |||||||||||||||||||||||  |||| || ||||||||||||    
T  28615334 tataagttgttttcataagctataatgaagagcttatgaaaataa 28615378  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 47800623 - 47800667
Alignment:
Q  9 tataagttgttttcataagctattttgaatagtttatgaaaataa 53  Q
    |||||| |||||||||||||||| ||||| || ||||||||||||    
T  47800623 tataagctgttttcataagctatcttgaagagcttatgaaaataa 47800667  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 53
Target Start/End: Original strand, 4576804 - 4576849
Alignment:
Q  8 ttataagttgttttcataagctattttgaatagtttatgaaaataa 53  Q
    ||||||| |||||||||||||||| |||||||  ||||||||||||    
T  4576804 ttataagctgttttcataagctatattgaataacttatgaaaataa 4576849  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 11893662 - 11893619
Alignment:
Q  9 tataagttgttttcataagctattttgaatagtttatgaaaataa 53  Q
    |||||||||||| |||||||||||||||| |||||||| ||||||    
T  11893662 tataagttgttt-cataagctattttgaagagtttatggaaataa 11893619  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 26779995 - 26779951
Alignment:
Q  9 tataagttgttttcataagctattttgaatagtttatgaaaataa 53  Q
    ||||||||||||||||||||||| ||||| |  ||||||||||||    
T  26779995 tataagttgttttcataagctatcttgaagaacttatgaaaataa 26779951  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 27754404 - 27754448
Alignment:
Q  9 tataagttgttttcataagctattttgaatagtttatgaaaataa 53  Q
    ||||||| ||||||||||||||||||| | || ||||||||||||    
T  27754404 tataagtggttttcataagctattttggagagcttatgaaaataa 27754448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 28769409 - 28769365
Alignment:
Q  9 tataagttgttttcataagctattttgaatagtttatgaaaataa 53  Q
    |||||| |||||||||||||||||||| | |||||||| ||||||    
T  28769409 tataagctgttttcataagctattttggagagtttatggaaataa 28769365  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 10272501 - 10272457
Alignment:
Q  9 tataagttgttttcataagctattttgaatagtttatgaaaataa 53  Q
    |||||||||||||||||||| || ||| | |||||||||||||||    
T  10272501 tataagttgttttcataagccatcttggagagtttatgaaaataa 10272457  T

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