View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10142_low_46 (Length: 255)

Name: NF10142_low_46
Description: NF10142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10142_low_46
NF10142_low_46
[»] chr2 (24 HSPs)
chr2 (18-238)||(10371847-10372067)
chr2 (18-229)||(10353107-10353318)
chr2 (18-218)||(10347794-10347994)
chr2 (74-199)||(9291965-9292090)
chr2 (60-229)||(9061116-9061285)
chr2 (60-199)||(8573480-8573619)
chr2 (60-229)||(9320980-9321146)
chr2 (38-199)||(9065543-9065707)
chr2 (75-229)||(9284180-9284334)
chr2 (60-229)||(9328597-9328766)
chr2 (76-199)||(10335872-10335995)
chr2 (59-232)||(12012520-12012693)
chr2 (60-191)||(12006093-12006224)
chr2 (41-191)||(9274557-9274707)
chr2 (74-199)||(16269117-16269242)
chr2 (60-229)||(11987465-11987631)
chr2 (76-218)||(7115633-7115775)
chr2 (60-205)||(9316041-9316180)
chr2 (60-193)||(9364662-9364795)
chr2 (136-191)||(12018939-12018994)
chr2 (112-192)||(17566110-17566190)
chr2 (120-190)||(8579522-8579592)
chr2 (74-127)||(8576398-8576451)
chr2 (112-192)||(7611974-7612054)
[»] chr4 (2 HSPs)
chr4 (18-229)||(26574856-26575070)
chr4 (115-174)||(561275-561334)
[»] chr7 (3 HSPs)
chr7 (92-229)||(45243697-45243834)
chr7 (92-232)||(45230427-45230570)
chr7 (117-199)||(45237978-45238060)
[»] chr1 (4 HSPs)
chr1 (32-192)||(29453251-29453411)
chr1 (39-192)||(29423300-29423453)
chr1 (32-192)||(29443268-29443428)
chr1 (60-229)||(29467755-29467924)
[»] chr8 (1 HSPs)
chr8 (62-199)||(41966682-41966819)
[»] chr3 (2 HSPs)
chr3 (74-229)||(37462487-37462645)
chr3 (130-190)||(39427680-39427740)
[»] scaffold0667 (1 HSPs)
scaffold0667 (64-188)||(4510-4634)
[»] chr5 (1 HSPs)
chr5 (130-191)||(36224454-36224515)


Alignment Details
Target: chr2 (Bit Score: 209; Significance: 1e-114; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 10372067 - 10371847
Alignment:
Q  18 gttcctctccctgatgaactaggtgaagaagttaatagtaatagttttgaaattcgtgttgctgttttaggcgggtgtctttgtatgactgtggattata 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  10372067 gttcctctccctgatgaactaggtgaagaagttaatagtaatagttttgaaattcgtgttgctgttttaggagggtgtctttgtatgactgtggattata 10371968  T
Q  118 aaactactaacgttgatatttgggtgatgaaagaatatggttctagagatagttggtttaaactttttactttggttaaatcaagtttggatttaccttt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||    
T  10371967 aaactactaacgttgatatttgggtgatgaaagaatatggttctagagatagttggtgtaaactttttactttggttaaatcaagtttgggtttaccttt 10371868  T
Q  218 ggaatctttgagacccttgtg 238  Q
    |||||||||||||||||||||    
T  10371867 ggaatctttgagacccttgtg 10371847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 18 - 229
Target Start/End: Complemental strand, 10353318 - 10353107
Alignment:
Q  18 gttcctctccctgatgaactaggtgaagaagttaatagtaatagttttgaaattcgtgttgctgttttaggcgggtgtctttgtatgactgtggattata 117  Q
    |||||||| ||||||||| |||  ||||||||||||||||| |||||| ||||||||||||||| |||||| |||||||||||||||| |||||||||||    
T  10353318 gttcctcttcctgatgaaatagaggaagaagttaatagtaagagttttaaaattcgtgttgctgctttaggagggtgtctttgtatgattgtggattata 10353219  T
Q  118 aaactactaacgttgatatttgggtgatgaaagaatatggttctagagatagttggtttaaactttttactttggttaaatcaagtttggatttaccttt 217  Q
    ||  ||||||  ||||| |||||||||||||||||||||| | |||||| ||||||| ||||||||||||| ||||||||||   ||| |||||||||||    
T  10353218 aagatactaaaattgatgtttgggtgatgaaagaatatggatgtagagagagttggtgtaaactttttactgtggttaaatcttctttcgatttaccttt 10353119  T
Q  218 ggaatctttgag 229  Q
    | ||||||||||    
T  10353118 gcaatctttgag 10353107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 18 - 218
Target Start/End: Complemental strand, 10347994 - 10347794
Alignment:
Q  18 gttcctctccctgatgaactaggtgaagaagttaatagtaatagttttgaaattcgtgttgctgttttaggcgggtgtctttgtatgactgtggattata 117  Q
    |||||||| ||||||||| ||||||||||||||||| || | ||||||||| ||| |||||||||||| || |||||||||||||| ||||| |||||||    
T  10347994 gttcctcttcctgatgaaataggtgaagaagttaatggtgagagttttgaagttcatgttgctgttttgggagggtgtctttgtatcactgtcgattata 10347895  T
Q  118 aaactactaacgttgatatttgggtgatgaaagaatatggttctagagatagttggtttaaactttttactttggttaaatcaagtttggatttaccttt 217  Q
    ||  ||||||  ||||| ||||||| |||||||||||||| | |||||||||||||| ||||||||||||| ||| | | ||  |||| |||||||||||    
T  10347894 aagatactaaaattgatgtttgggtcatgaaagaatatggatgtagagatagttggtgtaaactttttactatggctgagtcgtgtttcgatttaccttt 10347795  T
Q  218 g 218  Q
    |    
T  10347794 g 10347794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 74 - 199
Target Start/End: Complemental strand, 9292090 - 9291965
Alignment:
Q  74 tgttgctgttttaggcgggtgtctttgtatgactgtggattataaaactactaacgttgatatttgggtgatgaaagaatatggttctagagatagttgg 173  Q
    ||||||||||||||| | ||||||||||||||||||| ||||| ||||||||||  ||||| |||||||||||||| |||||||||||||||||||||||    
T  9292090 tgttgctgttttaggagagtgtctttgtatgactgtgaattatgaaactactaaaattgatgtttgggtgatgaaacaatatggttctagagatagttgg 9291991  T
Q  174 tttaaactttttactttggttaaatc 199  Q
    | ||||||||||||||||||||||||    
T  9291990 tgtaaactttttactttggttaaatc 9291965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 60 - 229
Target Start/End: Original strand, 9061116 - 9061285
Alignment:
Q  60 agttttgaaattcgtgttgctgttttaggcgggtgtctttgtatgactgtggattataaaactactaacgttgatatttgggtgatgaaagaatatggtt 159  Q
    |||||| ||||||||||||||||||| || ||||||||||| ||| ||||| ||||| || |||||||  ||||| |||||||||||||||| ||||| |    
T  9061116 agttttaaaattcgtgttgctgttttgggtgggtgtctttgcatgtctgtgaattatgaagctactaaaattgatgtttgggtgatgaaagactatggat 9061215  T
Q  160 ctagagatagttggtttaaactttttactttggttaaatcaagtttggatttacctttggaatctttgag 229  Q
    ||||||||||||||| ||||||||||||||||||||||||  ||||  ||| ||||||||| | ||||||    
T  9061216 ctagagatagttggtgtaaactttttactttggttaaatcgtgtttcaattcacctttggactttttgag 9061285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 60 - 199
Target Start/End: Original strand, 8573480 - 8573619
Alignment:
Q  60 agttttgaaattcgtgttgctgttttaggcgggtgtctttgtatgactgtggattataaaactactaacgttgatatttgggtgatgaaagaatatggtt 159  Q
    |||||| || ||||| |||||||||| || ||||||||||||||| ||||| ||||| |||| ||| |  ||||| ||||||||||||||||||||||||    
T  8573480 agttttaaatttcgtcttgctgttttgggtgggtgtctttgtatgtctgtgaattatgaaaccactgaaattgatgtttgggtgatgaaagaatatggtt 8573579  T
Q  160 ctagagatagttggtttaaactttttactttggttaaatc 199  Q
    ||||||||||||||| ||||||||||||||| ||||||||    
T  8573580 ctagagatagttggtgtaaactttttactttcgttaaatc 8573619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 60 - 229
Target Start/End: Complemental strand, 9321146 - 9320980
Alignment:
Q  60 agttttgaaattcgtgttgctgttttaggcgggtgtctttgtatgactgtggattataaaactactaacgttgatatttgggtgatgaaagaatatggtt 159  Q
    ||||||||||||  ||||| |||||| || ||||||||||| ||||||    ||||  ||||||| || |||||| ||||||||||||||||||||||||    
T  9321146 agttttgaaattgatgttgatgttttgggagggtgtctttgcatgactt---attacgaaactacaaaagttgatgtttgggtgatgaaagaatatggtt 9321050  T
Q  160 ctagagatagttggtttaaactttttactttggttaaatcaagtttggatttacctttggaatctttgag 229  Q
    ||||||||||||||| ||||||||||||| ||||||||||  |||  |||||||||||| ||||||||||    
T  9321049 ctagagatagttggtgtaaactttttactatggttaaatcgtgttacgatttacctttgaaatctttgag 9320980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 38 - 199
Target Start/End: Original strand, 9065543 - 9065707
Alignment:
Q  38 aggtgaagaagttaatagtaat---agttttgaaattcgtgttgctgttttaggcgggtgtctttgtatgactgtggattataaaactactaacgttgat 134  Q
    ||||||||| ||||||||||||   |||||| ||||   |||||||||||| || |||||||||||||||| | || ||||| ||||||||||  |||||    
T  9065543 aggtgaagaggttaatagtaatgagagttttcaaatgactgttgctgttttgggagggtgtctttgtatgattttgaattatgaaactactaatattgat 9065642  T
Q  135 atttgggtgatgaaagaatatggttctagagatagttggtttaaactttttactttggttaaatc 199  Q
      ||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| |||||    
T  9065643 ggttgggtgatgaaagaatatggatctagagatagttggtgtaaactttttactttggtcaaatc 9065707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 75 - 229
Target Start/End: Original strand, 9284180 - 9284334
Alignment:
Q  75 gttgctgttttaggcgggtgtctttgtatgactgtggattataaaactactaacgttgatatttgggtgatgaaagaatatggttctagagatagttggt 174  Q
    |||||||||||||| || |||||| |||||| |||| ||||| ||||||||||  ||||  |||||||||||||||||||||||||||||||||||||||    
T  9284180 gttgctgttttaggaggttgtcttagtatgattgtgaattatcaaactactaaaattgacgtttgggtgatgaaagaatatggttctagagatagttggt 9284279  T
Q  175 ttaaactttttactttggttaaatcaagtttggatttacctttggaatctttgag 229  Q
     |||| |||||||||||||||||||| | ||   ||||| |||| ||||||||||    
T  9284280 gtaaaatttttactttggttaaatcacggttcactttacgtttgaaatctttgag 9284334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 60 - 229
Target Start/End: Complemental strand, 9328766 - 9328597
Alignment:
Q  60 agttttgaaattcgtgttgctgttttaggcgggtgtctttgtatgactgtggattataaaactactaacgttgatatttgggtgatgaaagaatatggtt 159  Q
    ||||||||||||  ||||| |||||| || ||||||||||| |||||| || ||||| |||||||| |  ||||| |||||||||||||| ||||||| |    
T  9328766 agttttgaaattgatgttgatgttttgggagggtgtctttgcatgactttgaattatgaaactactgaaattgatgtttgggtgatgaaacaatatggat 9328667  T
Q  160 ctagagatagttggtttaaactttttactttggttaaatcaagtttggatttacctttggaatctttgag 229  Q
     |||||||||||||| ||||||||||||| ||||||||||  ||||  ||||||||||| ||||||||||    
T  9328666 atagagatagttggtgtaaactttttactatggttaaatcgtgtttccatttacctttgaaatctttgag 9328597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 76 - 199
Target Start/End: Complemental strand, 10335995 - 10335872
Alignment:
Q  76 ttgctgttttaggcgggtgtctttgtatgactgtggattataaaactactaacgttgatatttgggtgatgaaagaatatggttctagagatagttggtt 175  Q
    |||||||||| || |||||||||||| || ||||| ||||| ||||||||||  ||||| |||||||||||||||||||||| | ||||||||||||||     
T  10335995 ttgctgttttgggagggtgtctttgtttgcctgtgaattatcaaactactaaaattgatgtttgggtgatgaaagaatatggctgtagagatagttggtg 10335896  T
Q  176 taaactttttactttggttaaatc 199  Q
    ||||| ||||||||||||||||||    
T  10335895 taaacattttactttggttaaatc 10335872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 59 - 232
Target Start/End: Original strand, 12012520 - 12012693
Alignment:
Q  59 tagttttgaaattcgtgttgctgttttaggcgggtgtctttgtatgactgtggattataaaactactaacgttgatatttgggtgatgaaagaatatggt 158  Q
    |||||||||||||  |||||||| ||| || |||||||||||||||| |||| || || ||||||||||  ||||| | | |||||||||||||||||||    
T  12012520 tagttttgaaatttctgttgctgatttgggagggtgtctttgtatgattgtgaatcatcaaactactaagattgatgtattggtgatgaaagaatatggt 12012619  T
Q  159 tctagagatagttggtttaaactttttactttggttaaatcaagtttggatttacctttggaatctttgagacc 232  Q
    | || ||||||||||| ||||||||||||||||||  ||||  |||| | ||||||||||  || |||||||||    
T  12012620 tgtaaagatagttggtgtaaactttttactttggtggaatcgtgtttcgttttacctttgatatttttgagacc 12012693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 60 - 191
Target Start/End: Original strand, 12006093 - 12006224
Alignment:
Q  60 agttttgaaattcgtgttgctgttttaggcgggtgtctttgtatgactgtggattataaaactactaacgttgatatttgggtgatgaaagaatatggtt 159  Q
    ||||||||||||  |||||||| ||| || |||||||||||| ||| |||| ||||| ||||||||||  ||||| | ||||||||||||||||||||||    
T  12006093 agttttgaaattaatgttgctgatttgggagggtgtctttgtttgattgtgaattatcaaactactaagattgatgtatgggtgatgaaagaatatggtt 12006192  T
Q  160 ctagagatagttggtttaaactttttactttg 191  Q
     || ||||||||||| ||||||||||||||||    
T  12006193 gtaaagatagttggtgtaaactttttactttg 12006224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 41 - 191
Target Start/End: Complemental strand, 9274707 - 9274557
Alignment:
Q  41 tgaagaagttaatagtaatagttttgaaattcgtgttgctgttttaggcgggtgtctttgtatgactgtggattataaaactactaacgttgatatttgg 140  Q
    ||||||||| |||||| | ||||||||||||  ||||| |||||| |  |||||||||||||||||| || |||||  || |||| |  ||||  |||||    
T  9274707 tgaagaagtcaatagtgagagttttgaaattaatgttgttgttttggaagggtgtctttgtatgactttgaattatcgaaatactgaatttgaagtttgg 9274608  T
Q  141 gtgatgaaagaatatggttctagagatagttggtttaaactttttactttg 191  Q
    |||||||||||||||||||||| ||||||||||| ||||||||||||||||    
T  9274607 gtgatgaaagaatatggttctacagatagttggtgtaaactttttactttg 9274557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 74 - 199
Target Start/End: Complemental strand, 16269242 - 16269117
Alignment:
Q  74 tgttgctgttttaggcgggtgtctttgtatgactgtggattataaaactactaacgttgatatttgggtgatgaaagaatatggttctagagatagttgg 173  Q
    |||||||||||| || || ||||||||||| |||||| ||||| ||||||||||  ||||| |||||||||||||||| ||||| | |||||||||||||    
T  16269242 tgttgctgttttgggaggatgtctttgtataactgtgaattatgaaactactaaaattgatgtttgggtgatgaaagagtatggatatagagatagttgg 16269143  T
Q  174 tttaaactttttactttggttaaatc 199  Q
    |  ||||||||||| |||||||||||    
T  16269142 tgcaaactttttaccttggttaaatc 16269117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 60 - 229
Target Start/End: Original strand, 11987465 - 11987631
Alignment:
Q  60 agttttgaaattcgtgttgctgttttaggcgggtgtctttgtatgactgtggattataaaactactaacgttgatatttgggtgatgaaagaatatggtt 159  Q
    ||||||||||||  |||||||||||| || |||||||||||| |||||||| || || |   ||||||  |||||||||||||||||||||||||||| |    
T  11987465 agttttgaaattgatgttgctgttttgggagggtgtctttgtttgactgtgaatcatca---tactaagattgatatttgggtgatgaaagaatatggat 11987561  T
Q  160 ctagagatagttggtttaaactttttactttggttaaatcaagtttggatttacctttggaatctttgag 229  Q
     |||||||||||||| ||||||||| || ||| |  ||||  |||| | |||||||||| ||||||||||    
T  11987562 gtagagatagttggtgtaaacttttcacattgatggaatcgtgtttcgttttacctttgaaatctttgag 11987631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 76 - 218
Target Start/End: Original strand, 7115633 - 7115775
Alignment:
Q  76 ttgctgttttaggcgggtgtctttgtatgactgtggattataaaactactaacgttgatatttgggtgatgaaagaatatggttctagagatagttggtt 175  Q
    |||||||||| || |||||||||||||||| |||| |||||| |||||||||    ||| |||||||||||||| ||||||| |||||||| || ||||     
T  7115633 ttgctgttttgggagggtgtctttgtatgattgtgaattatagaactactaaaacagatgtttgggtgatgaaacaatatggatctagagacagctggtg 7115732  T
Q  176 taaactttttactttggttaaatcaagtttggatttacctttg 218  Q
    |||||||||||| |||||||| ||  |||| |||||| |||||    
T  7115733 taaactttttacattggttaattcgtgtttcgatttatctttg 7115775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 60 - 205
Target Start/End: Complemental strand, 9316180 - 9316041
Alignment:
Q  60 agttttgaaattcgtgttgctgttttaggcgggtgtctttgtatgactgtggattataaaactactaacgttgatatttgggtgatgaaagaatatggtt 159  Q
    |||||| |||||  |||||||||||| || |||||||||||||||| | || ||||| ||||||||||   |||| |||||||||||||||| ||||| |    
T  9316180 agttttcaaattgctgttgctgttttgggagggtgtctttgtatgattttgaattatcaaactactaaaactgatgtttgggtgatgaaagactatggat 9316081  T
Q  160 ctagagatagttggtttaaactttttactttggttaaatcaagttt 205  Q
    |      |||||||| ||||||||||||||||||||| ||| ||||    
T  9316080 c------tagttggtgtaaactttttactttggttaattcatgttt 9316041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 60 - 193
Target Start/End: Complemental strand, 9364795 - 9364662
Alignment:
Q  60 agttttgaaattcgtgttgctgttttaggcgggtgtctttgtatgactgtggattataaaactactaacgttgatatttgggtgatgaaagaatatggtt 159  Q
    |||||||||||   |||||| ||||| || ||||||||| |||||| |||| ||||| |||||||| |  ||||| |||||||||||||||||||||| |    
T  9364795 agttttgaaatcgatgttgcggttttgggagggtgtcttagtatgattgtgaattatcaaactactcaaattgatgtttgggtgatgaaagaatatggat 9364696  T
Q  160 ctagagatagttggtttaaactttttactttggt 193  Q
      | ||||||||||| |||| | |||||||||||    
T  9364695 taaaagatagttggtgtaaattgtttactttggt 9364662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 136 - 191
Target Start/End: Original strand, 12018939 - 12018994
Alignment:
Q  136 tttgggtgatgaaagaatatggttctagagatagttggtttaaactttttactttg 191  Q
    |||||||||||||||||||||| | |||||||||||||| ||||||||||||||||    
T  12018939 tttgggtgatgaaagaatatggatgtagagatagttggtgtaaactttttactttg 12018994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 112 - 192
Target Start/End: Original strand, 17566110 - 17566190
Alignment:
Q  112 attataaaactactaacgttgatatttgggtgatgaaagaatatggttctagagatagttggtttaaactttttactttgg 192  Q
    ||||| |||||||||| |||||| |||||||||| ||||||||||| | |||||||| ||||| |||| | ||||| ||||    
T  17566110 attatcaaactactaatgttgatgtttgggtgattaaagaatatggatttagagataattggtgtaaattgtttaccttgg 17566190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 120 - 190
Target Start/End: Original strand, 8579522 - 8579592
Alignment:
Q  120 actactaacgttgatatttgggtgatgaaagaatatggttctagagatagttggtttaaactttttacttt 190  Q
    |||||||| |||||  |||||||||||||| ||||||| | |||||||||||||| |||| | ||||||||    
T  8579522 actactaaggttgaggtttgggtgatgaaaaaatatggatttagagatagttggtgtaaattgtttacttt 8579592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 74 - 127
Target Start/End: Original strand, 8576398 - 8576451
Alignment:
Q  74 tgttgctgttttaggcgggtgtctttgtatgactgtggattataaaactactaa 127  Q
    |||||||||||| || |||||||||||||||| |||| ||||| ||||||||||    
T  8576398 tgttgctgtttttggagggtgtctttgtatgagtgtgaattatgaaactactaa 8576451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 192
Target Start/End: Complemental strand, 7612054 - 7611974
Alignment:
Q  112 attataaaactactaacgttgatatttgggtgatgaaagaatatggttctagagatagttggtttaaactttttactttgg 192  Q
    ||||| |||||| |||  ||||| |||||||||||||||||||||| |  | ||||||||||| |||| | ||||||||||    
T  7612054 attatgaaactattaagtttgatgtttgggtgatgaaagaatatggattaaaagatagttggtgtaaattgtttactttgg 7611974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 18 - 229
Target Start/End: Complemental strand, 26575070 - 26574856
Alignment:
Q  18 gttcctctccctgatgaactaggtgaagaagttaatagtaatagttttgaaattcgtgttgctgttttaggcgggtgtctttgtatgactgtggattata 117  Q
    |||||||| ||||||||| |||| ||| ||||||||||||| |||||| ||||||||||||||| |||||| ||||||||||||||||||||||||||||    
T  26575070 gttcctcttcctgatgaaataggggaacaagttaatagtaagagttttaaaattcgtgttgctgatttaggagggtgtctttgtatgactgtggattata 26574971  T
Q  118 aaactactaacgttgatatttgggtgatgaaagaatatggttctagagatagttggtttaaactttttactttggttaaatcaagttt---ggatttacc 214  Q
    ||  ||||||  ||||| |||||||||||||||||||||| | |||||||||||||| ||||||||||||| ||||||||||  ||||    ||||||||    
T  26574970 aagatactaaaattgatgtttgggtgatgaaagaatatggatgtagagatagttggtgtaaactttttactgtggttaaatcgtgtttcgatgatttacc 26574871  T
Q  215 tttggaatctttgag 229  Q
    | |||||||||||||    
T  26574870 tgtggaatctttgag 26574856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 115 - 174
Target Start/End: Complemental strand, 561334 - 561275
Alignment:
Q  115 ataaaactactaacgttgatatttgggtgatgaaagaatatggttctagagatagttggt 174  Q
    ||||||||||||| |||||| ||||||| |||||||||||||| | ||||||||||||||    
T  561334 ataaaactactaaggttgatgtttgggtaatgaaagaatatggatttagagatagttggt 561275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 74; Significance: 5e-34; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 92 - 229
Target Start/End: Complemental strand, 45243834 - 45243697
Alignment:
Q  92 gtgtctttgtatgactgtggattataaaactactaacgttgatatttgggtgatgaaagaatatggttctagagatagttggtttaaactttttactttg 191  Q
    |||||||||||||| |||| ||||| |||||| | |  ||||| ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||    
T  45243834 gtgtctttgtatgattgtgaattatcaaactaatgaaattgatgtttgggtgatgaaagaatatggttctagagatatttggtgtaaactttttactttg 45243735  T
Q  192 gttaaatcaagtttggatttacctttggaatctttgag 229  Q
    ||||||||  ||||  |||| | |||||||||||||||    
T  45243734 gttaaatcgtgtttcaattttcatttggaatctttgag 45243697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 92 - 232
Target Start/End: Complemental strand, 45230570 - 45230427
Alignment:
Q  92 gtgtctttgtatgactgtggattataaaactactaa---cgttgatatttgggtgatgaaagaatatggttctagagatagttggtttaaactttttact 188  Q
    |||||||||||||| |||| ||||| |||||| |||    | |||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  45230570 gtgtctttgtatgattgtgaattatcaaactaataaaattgatgatgtttgggtgatgaaagaatatggttctagagatagttggtgtaaactttttact 45230471  T
Q  189 ttggttaaatcaagtttggatttacctttggaatctttgagacc 232  Q
    |||||||||||  | ||  |||| | ||||| ||||||||||||    
T  45230470 ttggttaaatcgtggttcaattttcatttggtatctttgagacc 45230427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 117 - 199
Target Start/End: Complemental strand, 45238060 - 45237978
Alignment:
Q  117 aaaactactaacgttgatatttgggtgatgaaagaatatggttctagagatagttggtttaaactttttactttggttaaatc 199  Q
    ||||||||| |  ||||| |||||||||||||||||||||| |||||||||||||||| ||||||||||||||| ||| ||||    
T  45238060 aaaactactcaaattgatgtttgggtgatgaaagaatatggatctagagatagttggtgtaaactttttactttagttgaatc 45237978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 73; Significance: 2e-33; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 32 - 192
Target Start/End: Original strand, 29453251 - 29453411
Alignment:
Q  32 tgaactaggtgaagaagttaatagtaatagttttgaaattcgtgttgctgttttaggcgggtgtctttgtatgactgtggattataaaactactaacgtt 131  Q
    |||| ||||||||||||| |||||| | |||||||||||| ||||||| ||||| |  |||||||||||||||| |||| ||||| |||||  |||  ||    
T  29453251 tgaaataggtgaagaagtgaatagtgagagttttgaaattggtgttgcggttttggaagggtgtctttgtatgattgtgaattatcaaactgttaaaatt 29453350  T
Q  132 gatatttgggtgatgaaagaatatggttctagagatagttggtttaaactttttactttgg 192  Q
    ||| |||||||||||||||||||||| | ||||||||| |||| | |||||||||||||||    
T  29453351 gatgtttgggtgatgaaagaatatggatgtagagatagctggtgtgaactttttactttgg 29453411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 39 - 192
Target Start/End: Complemental strand, 29423453 - 29423300
Alignment:
Q  39 ggtgaagaagttaatagtaatagttttgaaattcgtgttgctgttttaggcgggtgtctttgtatgactgtggattataaaactactaacgttgatattt 138  Q
    ||||||||||| |||||| | |||||||||||| ||||||| ||| | |  ||||| ||||||||||||||| ||||| |||||  |||  ||||| |||    
T  29423453 ggtgaagaagtgaatagtgagagttttgaaattggtgttgcggttctggaagggtgcctttgtatgactgtgaattatcaaactgttaaaattgatgttt 29423354  T
Q  139 gggtgatgaaagaatatggttctagagatagttggtttaaactttttactttgg 192  Q
    || |||||||||||||||| | ||||||||| |||| |||||||||||||||||    
T  29423353 ggctgatgaaagaatatggatgtagagatagctggtgtaaactttttactttgg 29423300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 32 - 192
Target Start/End: Original strand, 29443268 - 29443428
Alignment:
Q  32 tgaactaggtgaagaagttaatagtaatagttttgaaattcgtgttgctgttttaggcgggtgtctttgtatgactgtggattataaaactactaacgtt 131  Q
    |||| |||||||||| ||||||||| | |||||| ||||| || || | ||| | |  |||||||||||||||| |||| ||||| ||||| ||||  ||    
T  29443268 tgaaataggtgaagatgttaatagtgagagttttcaaattggtatttcggttctggaagggtgtctttgtatgattgtgaattatcaaactgctaaaatt 29443367  T
Q  132 gatatttgggtgatgaaagaatatggttctagagatagttggtttaaactttttactttgg 192  Q
    ||| |||||||||||||||||||||| | ||||||||| |||| |||||||||||||||||    
T  29443368 gatgtttgggtgatgaaagaatatggatgtagagatagctggtgtaaactttttactttgg 29443428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 60 - 229
Target Start/End: Original strand, 29467755 - 29467924
Alignment:
Q  60 agttttgaaattcgtgttgctgttttaggcgggtgtctttgtatgactgtggattataaaactactaacgttgatatttgggtgatgaaagaatatggtt 159  Q
    |||||| |||||  |||||| ||||| || ||||||||||   ||| |||| ||||| |||||| |||  ||||| ||||| |||||||||||||||| |    
T  29467755 agttttaaaattgatgttgcggttttgggagggtgtctttagttgattgtgaattatcaaactagtaaaattgatgtttggttgatgaaagaatatggat 29467854  T
Q  160 ctagagatagttggtttaaactttttactttggttaaatcaagtttggatttacctttggaatctttgag 229  Q
     |||||||||||||  |||||||||||||||||||| |||  ||||   |||||  ||||||||||||||    
T  29467855 gtagagatagttggcgtaaactttttactttggttagatcgtgtttcactttacagttggaatctttgag 29467924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 62 - 199
Target Start/End: Original strand, 41966682 - 41966819
Alignment:
Q  62 ttttgaaattcgtgttgctgttttaggcgggtgtctttgtatgactgtggattataaaactactaacgttgatatttgggtgatgaaagaatatggttct 161  Q
    ||||||||||  |||| ||||||| || |||||||||||||||  |||||||||| ||||||   | |||||| |||||||||||||||||||| | |||    
T  41966682 ttttgaaatttctgtttctgttttgggagggtgtctttgtatggttgtggattatcaaactagcgatgttgatgtttgggtgatgaaagaatatcgatct 41966781  T
Q  162 agagatagttggtttaaactttttactttggttaaatc 199  Q
    |||||||| |||| ||||||||||||||||||||||||    
T  41966782 agagatagctggtgtaaactttttactttggttaaatc 41966819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 69; Significance: 5e-31; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 74 - 229
Target Start/End: Complemental strand, 37462645 - 37462487
Alignment:
Q  74 tgttgctgttttaggcgggtgtctttgtatgactgtggattataaaa---ctactaacgttgatatttgggtgatgaaagaatatggttctagagatagt 170  Q
    |||||||||||| || || |||||||||||||||||| |||||||||   |||||||  ||||| |||||||||||||||||||||| ||||||||||||    
T  37462645 tgttgctgttttgggaggctgtctttgtatgactgtgaattataaaaaaactactaaatttgatgtttgggtgatgaaagaatatggatctagagatagt 37462546  T
Q  171 tggtttaaactttttactttggttaaatcaagtttggatttacctttggaatctttgag 229  Q
    |||| |||||||| |||| ||| ||||||  ||||   || ||||||| ||||||||||    
T  37462545 tggtgtaaactttgtactgtggataaatcgtgtttcacttcacctttgaaatctttgag 37462487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 190
Target Start/End: Complemental strand, 39427740 - 39427680
Alignment:
Q  130 ttgatatttgggtgatgaaagaatatggttctagagatagttggtttaaactttttacttt 190  Q
    ||||| |||||||||||||||||||||| | |||| ||||||||| |||| | ||||||||    
T  39427740 ttgatgtttgggtgatgaaagaatatggatatagatatagttggtgtaaattgtttacttt 39427680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0667 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 64 - 188
Target Start/End: Complemental strand, 4634 - 4510
Alignment:
Q  64 ttgaaattcgtgttgctgttttaggcgggtgtctttgtatgactgtggattataaaactactaacgttgatatttgggtgatgaaagaatatggttctag 163  Q
    ||||||||  |||||||| ||| || || |||||||||||||||||| ||||| ||||||||||  ||||| |||||||||||||| ||||||| |  |     
T  4634 ttgaaattgatgttgctgctttgggaggatgtctttgtatgactgtgaattatgaaactactaaaattgatgtttgggtgatgaaacaatatggattaaa 4535  T
Q  164 agatagttggtttaaactttttact 188  Q
    ||||||||||| |||||||||||||    
T  4534 agatagttggtgtaaactttttact 4510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 130 - 191
Target Start/End: Complemental strand, 36224515 - 36224454
Alignment:
Q  130 ttgatatttgggtgatgaaagaatatggttctagagatagttggtttaaactttttactttg 191  Q
    ||||| |||||||||||||||||||||| | |||||||||||||| |||| | |||||||||    
T  36224515 ttgatgtttgggtgatgaaagaatatggatttagagatagttggtgtaaattgtttactttg 36224454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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