View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10142_low_48 (Length: 253)
Name: NF10142_low_48
Description: NF10142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10142_low_48 |
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Alignment Details
Target: chr3 (Bit Score: 240; Significance: 1e-133; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 39566814 - 39567053
Alignment:
| Q |
1 |
cagtatcttaatgcaatccataactgggaccccaaaagtaacattagaataagcaaggtttttgtactgactaaaattcttgaatgctggtatcaattga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39566814 |
cagtatcttaatgcaatccataactgggaccccaaaagtaacattagaataagcaaggtttttgtactgactaaaattcttgaatgctggtatcaattga |
39566913 |
T |
|
| Q |
101 |
cagccatcaataaagctagaacctcagttggcatttttatctgattaaactcacttagttgtaataatgtacattattattttgaaaacatgtacggaat |
200 |
Q |
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| T |
39566914 |
cagccatcaataaagctagaacctcagttggcatttttatctgattaaactcacttagttgtaataatgtacattattattttgaaaacatgtacggaat |
39567013 |
T |
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| Q |
201 |
tttcctaccactcattaagcttacaaatatatagtctgtg |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
39567014 |
tttcctaccactcattaagcttacaaatatatagtctgtg |
39567053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 39562135 - 39562376
Alignment:
| Q |
1 |
cagtatcttaatgcaatccataactgggaccccaaaagtaacattagaataagcaaggtttttgtactgactaaaattcttgaatgctggtatcaattga |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |
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| T |
39562135 |
cagtatcttaatgcaatccataactgggaccccaaaagtaacattagaataagcaaggtttttgtactgactaaagttcttgaatgctggcctcaattgg |
39562234 |
T |
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| Q |
101 |
cagccatcaataaagctagaa-cctcagttggcatttttatctgattaaactcacttagttgtaataatgtacatt-attat--tttgaaaacatgtacg |
196 |
Q |
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| T |
39562235 |
cagccatcaataaaactagaaccctcagttggcattcttatctaattaaactcac-tagttgtgataatgtacattaattattattagaaaacat-tgca |
39562332 |
T |
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| Q |
197 |
gaattttcctaccactcattaagcttacaaatatatagtctgtg |
240 |
Q |
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| T |
39562333 |
aaattttcctaccactcatcaagcttacagtaatatagtctgtg |
39562376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 39572325 - 39572498
Alignment:
| Q |
1 |
cagtatcttaatgcaatccataactgggaccccaaaagtaacattagaataagcaaggtttttgtactgactaaaattcttgaatgctggtatcaattga |
100 |
Q |
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|||||||||||||||||||||||||||||| |||||||||| |||||||||| ||||||||||||||| ||||||| |||||||||||| || | | | |
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| T |
39572325 |
cagtatcttaatgcaatccataactgggacaccaaaagtaatattagaataaccaaggtttttgtactaactaaaacccttgaatgctggcttccact-a |
39572423 |
T |
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| Q |
101 |
cagccatcaataaagctagaa-cctcagttggcatttttatctgattaaactcacttagttgtaataatgtacatta |
176 |
Q |
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| T |
39572424 |
ca-ccatcaataaaactagaaccctcagttggcattcttatctaattaaactcac-tagttgtgataatgtacatta |
39572498 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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