View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10142_low_52 (Length: 249)
Name: NF10142_low_52
Description: NF10142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10142_low_52 |
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| [»] scaffold0041 (1 HSPs) |
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Alignment Details
Target: scaffold0041 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 77963 - 77727
Alignment:
| Q |
1 |
aaaagaaaccattctgtctaaaaagcaaccaagtaaacaacaaaaaattaatatgaaaatgtcggtgaaacaattgttttttcaaatgaatcaaacaatg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
77963 |
aaaagaaaccattctgtctaaaaagcaaccaagtaaacaacaaaaaatcaatatgaaaatgtcggtgaaacaattgttttttcaaatgaatcaaacaatg |
77864 |
T |
|
| Q |
101 |
agatatggtaatttcttcacgctaaaactagaaattaacacacaaattgcatgctaattgctaacctggtaaggcaataaaagcatctgaatgtttggcc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
77863 |
agatatggtaatttcttcacgctaaaactagaaattaacacacaaattgcatgctaattgctaacctggtaaggcaataaaagcatctgaatgtttggcc |
77764 |
T |
|
| Q |
201 |
atctcagctttcctttgatgcatatcagcaacagcct |
237 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
77763 |
atctcagctttcctttgatgcatatcagcaacagcct |
77727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 40888321 - 40888557
Alignment:
| Q |
1 |
aaaagaaaccattctgtctaaaaagcaaccaagtaaacaacaaaaaattaatatgaaaatgtcggtgaaacaattgttttttcaaatgaatcaaacaatg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40888321 |
aaaagaaaccattctgtctaaaaagcaaccaagtaaacaacaaaaaatcaatatgaaaatgtcggtgaaacaattgttttttcaaatgaatcaaacaatg |
40888420 |
T |
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| Q |
101 |
agatatggtaatttcttcacgctaaaactagaaattaacacacaaattgcatgctaattgctaacctggtaaggcaataaaagcatctgaatgtttggcc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40888421 |
agatatggtaatttcttcacgctaaaactagaaattaacacacaaattgcatgctaattgctaacctggtaaggcaataaaagcatctgaatgtttggcc |
40888520 |
T |
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| Q |
201 |
atctcagctttcctttgatgcatatcagcaacagcct |
237 |
Q |
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| T |
40888521 |
atctcagctttcctttgatgcatatcagcaacagcct |
40888557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 107; Significance: 9e-54; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 14904949 - 14904718
Alignment:
| Q |
1 |
aaaagaaaccattctgtctaaaaagcaaccaagtaaacaacaaaaaattaatatgaaaatgtcggtgaaacaattgttttttcaaatgaatcaaacaatg |
100 |
Q |
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|
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| ||||||||||||| |
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| T |
14904949 |
aaaagaaaccattatgtctaaaaagcaaccaagtaaacaacaaaaa---aatatgaaaatgtcggtgaaacaatt-atttttcaaaggaatcaaacaatg |
14904854 |
T |
|
| Q |
101 |
agatatggtaatttcttcacgcta-------aaa---ctagaaattaacacacaaattgcatgctaattgctaacctggtaaggcaataaaagcatctga |
190 |
Q |
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| |||||||||||||||||||||| ||| ||||||||||| |||||||||||| ||||||||||||||||||||||||||||| || |
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| T |
14904853 |
aaatatggtaatttcttcacgctatgactataaaatgctagaaattaatacacaaattgca-------tgctaacctggtaaggcaataaaagcatcgga |
14904761 |
T |
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| Q |
191 |
atgtttggccatctcagctttcctttgatgcatatcagcaaca |
233 |
Q |
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||| | ||| ||||||| ||||||| |||||||||||||||| |
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| T |
14904760 |
atgcctagccgtctcagcattccttttatgcatatcagcaaca |
14904718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 161 - 235
Target Start/End: Original strand, 28270718 - 28270792
Alignment:
| Q |
161 |
ctaacctggtaaggcaataaaagcatctgaatgtttggccatctcagctttcctttgatgcatatcagcaacagc |
235 |
Q |
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||||||||||||||||||||||||||||||||| || |||||||| || ||||||||||||||||| || ||||| |
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| T |
28270718 |
ctaacctggtaaggcaataaaagcatctgaatgcttagccatctctgccttcctttgatgcatatctgctacagc |
28270792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 163 - 223
Target Start/End: Complemental strand, 21626729 - 21626669
Alignment:
| Q |
163 |
aacctggtaaggcaataaaagcatctgaatgtttggccatctcagctttcctttgatgcat |
223 |
Q |
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||||||||||||||||||||||||| ||||| || |||||||||||||| ||||||||||| |
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| T |
21626729 |
aacctggtaaggcaataaaagcatcagaatgcttagccatctcagcttttctttgatgcat |
21626669 |
T |
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