View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10142_low_55 (Length: 245)
Name: NF10142_low_55
Description: NF10142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10142_low_55 |
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Alignment Details
Target: chr8 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 19 - 233
Target Start/End: Original strand, 42729346 - 42729560
Alignment:
| Q |
19 |
gatgaatgaattgaatttgtctaacaaagtatagtatataccaagtcaaagagacttgaacgtcgcttcttgttgatagtagccaatctgagaaagtatt |
118 |
Q |
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| T |
42729346 |
gatgaatgaattgaatttgtctaacaaagtatagtatataccaagtcaaagagacttgaacgtcgcttcttgttgatagtagccaatctgagaaagtatt |
42729445 |
T |
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| Q |
119 |
tttgagcatggctagcaacttgtgtaggagttcttgaagtgacaaagtttttagagattcctctccagtctccttttcctagcttctctaatccaacaag |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42729446 |
tttgagcatggctagcaacttgtgtaggagttcttgaagtgacaaagtttttagagattcctctccagtctccttttcctagcttctctaatccaacaag |
42729545 |
T |
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| Q |
219 |
aaacattctgtgctc |
233 |
Q |
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|||||||||||||| |
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| T |
42729546 |
gaacattctgtgctc |
42729560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 118 - 218
Target Start/End: Complemental strand, 34848523 - 34848423
Alignment:
| Q |
118 |
ttttgagcatggctagcaacttgtgtaggagttcttgaagtgacaaagtttttagagattcctctccagtctccttttcctagcttctctaatccaacaa |
217 |
Q |
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|||||||||||||| ||||||||||| || ||||||| ||| ||| ||||| ||||||| || ||||| ||||||||||| |||||||| | |||||||| |
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| T |
34848523 |
ttttgagcatggcttgcaacttgtgttggtgttcttgtagtcacatagtttctagagatacccctccaatctccttttccaagcttctcaagtccaacaa |
34848424 |
T |
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| Q |
218 |
g |
218 |
Q |
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| T |
34848423 |
g |
34848423 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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