View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10142_low_59 (Length: 241)
Name: NF10142_low_59
Description: NF10142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10142_low_59 |
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Alignment Details
Target: chr2 (Bit Score: 113; Significance: 2e-57; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 19 - 146
Target Start/End: Original strand, 40966626 - 40966754
Alignment:
| Q |
19 |
ttggactaggtataagcattgatgatttgtgtttctaggttaattcttgaaaaattgatttcaattaggataatatcctttatttttgaactttcatctc |
118 |
Q |
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| T |
40966626 |
ttggactaggtataagcattgatgatttgtgtttttaggttaattcttgaaaaattgatttcaattaggataatatcctttatttttgaactttcatctc |
40966725 |
T |
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| Q |
119 |
aagttcaagaatg-aggatctttccacga |
146 |
Q |
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| T |
40966726 |
aagtttaagaatgaaggatctttccacga |
40966754 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 145 - 220
Target Start/End: Original strand, 40966798 - 40966873
Alignment:
| Q |
145 |
gaaccaagaaaagaattataaacatacaaaaaagtgaattagacaagaagatcaatctggagatgaatgatcacta |
220 |
Q |
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| T |
40966798 |
gaaccaagaaaagaattataaacatacaaaaaagtgaattagacaagaagatcaatatggagatgaatgatcacta |
40966873 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 83
Target Start/End: Complemental strand, 40966796 - 40966754
Alignment:
| Q |
41 |
tgatttgtgtttctaggttaattcttgaaaaattgatttcaat |
83 |
Q |
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| T |
40966796 |
tgatttgcgtttctaggttaattcttgaaaatttgaattcaat |
40966754 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 85
Target Start/End: Complemental strand, 27695363 - 27695319
Alignment:
| Q |
41 |
tgatttgtgtttctaggttaattcttgaaaaattgatttcaatta |
85 |
Q |
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| T |
27695363 |
tgatttgtatttttaggttaattcttgaaatattgaattcaatta |
27695319 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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