View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10142_low_6 (Length: 511)

Name: NF10142_low_6
Description: NF10142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10142_low_6
NF10142_low_6
[»] chr1 (2 HSPs)
chr1 (247-481)||(9975483-9975715)
chr1 (24-244)||(9975786-9976000)
[»] chr7 (3 HSPs)
chr7 (21-154)||(7112664-7112792)
chr7 (190-241)||(7112831-7112882)
chr7 (431-481)||(7113053-7113103)
[»] chr8 (2 HSPs)
chr8 (104-154)||(41484923-41484973)
chr8 (190-241)||(41485013-41485064)
[»] chr4 (1 HSPs)
chr4 (79-141)||(9410548-9410610)
[»] chr6 (1 HSPs)
chr6 (438-466)||(19855786-19855814)


Alignment Details
Target: chr1 (Bit Score: 145; Significance: 4e-76; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 247 - 481
Target Start/End: Complemental strand, 9975715 - 9975483
Alignment:
Q  247 aaatcatatggataagtagcctctattatcatgttcatattannnnnnnn-acttatgttttatcatgtattatatattaaatacttccaacacttccat 345  Q
    |||||||||||||||||||||| ||||||||||||||||||          |||||||||||||||| ||||||||||||||||||||||||||||||||    
T  9975715 aaatcatatggataagtagcctatattatcatgttcatattttttttttttacttatgttttatcatatattatatattaaatacttccaacacttccat 9975616  T
Q  346 atgatttgtatcnnnnnnnnnnnnnnacaatgataacgtaccaaaccaaccattaactaatattccatgtttccacaaaataattatacaggcaacagag 445  Q
    ||||||||||||              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9975615 atgatttgtatctaattgttttt---acaatgataacgtaccaaaccaaccattaactaatattccatgtttccacaaaataattatacaggcaacagag 9975519  T
Q  446 attcagatgcacactcacaaatctcatacaacttct 481  Q
    ||||||||||||||||||||||||||||||||||||    
T  9975518 attcagatgcacactcacaaatctcatacaacttct 9975483  T

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Target: chr1; HSP #2
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 24 - 244
Target Start/End: Complemental strand, 9976000 - 9975786
Alignment:
Q  24 agaaaaacaaattatagtaaattgatatttagaagtagaatgcnnnnnnnnnnnnctgctatgcaatggataaaaattagaacacatttttaaaagaaaa 123  Q
    |||||||||||||||||||||||||||||||||||||||||||            |||||||||||||||| ||||||||||||||||||||| ||||||    
T  9976000 agaaaaacaaattatagtaaattgatatttagaagtagaatgcatatatat----ctgctatgcaatggattaaaattagaacacatttttaatagaaaa 9975905  T
Q  124 aatagaatgagatttttgttatagatgaaaaatgtggtaaaatagaatgagannnnnnngttatagatgaaataagagcctccaactgatcatcctaacc 223  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||    
T  9975904 aatagaatgagatttttgttatagatg-aaaatgtggtaaaatagaatgaga-ttttttgttatagatgaaataagagcctccaactgatcatcctaacc 9975807  T
Q  224 catatgcaattcccatcagat 244  Q
    |||||||||||||||||||||    
T  9975806 catatgcaattcccatcagat 9975786  T

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Target: chr7 (Bit Score: 65; Significance: 2e-28; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 21 - 154
Target Start/End: Original strand, 7112664 - 7112792
Alignment:
Q  21 ataagaaaaacaaattatagtaaattgatatttagaagtagaatgcnnnnnnnnnnnnctgctatgcaatggataaaaattagaacacatttttaaaaga 120  Q
    ||||||||||||||||| |||||| |||||||||||| ||||||||            ||| |||||||||||| |||||||||||||||||||||||||    
T  7112664 ataagaaaaacaaattagagtaaaatgatatttagaaatagaatgcataatat-----ctgatatgcaatggattaaaattagaacacatttttaaaaga 7112758  T
Q  121 aaaaatagaatgagatttttgttatagatgaaaa 154  Q
    |||||||||||||||| ||| |||||||||||||    
T  7112759 aaaaatagaatgagatctttattatagatgaaaa 7112792  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 190 - 241
Target Start/End: Original strand, 7112831 - 7112882
Alignment:
Q  190 atgaaataagagcctccaactgatcatcctaacccatatgcaattcccatca 241  Q
    |||||||||| ||||||||||||||||||||||||||||| |||| ||||||    
T  7112831 atgaaataagggcctccaactgatcatcctaacccatatgtaatttccatca 7112882  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 431 - 481
Target Start/End: Original strand, 7113053 - 7113103
Alignment:
Q  431 atacaggcaacagagattcagatgcacactcacaaatctcatacaacttct 481  Q
    ||||| ||||| |||||||||||||||||||||||||  ||||||||||||    
T  7113053 atacaagcaacggagattcagatgcacactcacaaattccatacaacttct 7113103  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 104 - 154
Target Start/End: Original strand, 41484923 - 41484973
Alignment:
Q  104 aacacatttttaaaagaaaaaatagaatgagatttttgttatagatgaaaa 154  Q
    |||||||||||||||| ||||||||||||| || |||||||||||||||||    
T  41484923 aacacatttttaaaagcaaaaatagaatgaaatctttgttatagatgaaaa 41484973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 190 - 241
Target Start/End: Original strand, 41485013 - 41485064
Alignment:
Q  190 atgaaataagagcctccaactgatcatcctaacccatatgcaattcccatca 241  Q
    ||||||||||||||||||| ||| ||||||||||| |||| |||||||||||    
T  41485013 atgaaataagagcctccaaatgaccatcctaacccttatgaaattcccatca 41485064  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 79 - 141
Target Start/End: Original strand, 9410548 - 9410610
Alignment:
Q  79 ctgctatgcaatggataaaaattagaacacatttttaaaagaaaaaatagaatgagatttttg 141  Q
    |||||||||||| ||| | |||| |  |||||||||||||||||||||||||| |||| ||||    
T  9410548 ctgctatgcaattgattagaattcggccacatttttaaaagaaaaaatagaataagatctttg 9410610  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 438 - 466
Target Start/End: Original strand, 19855786 - 19855814
Alignment:
Q  438 caacagagattcagatgcacactcacaaa 466  Q
    |||||||||||||||||||||||||||||    
T  19855786 caacagagattcagatgcacactcacaaa 19855814  T

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