View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10142_low_7 (Length: 510)
Name: NF10142_low_7
Description: NF10142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10142_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 158; Significance: 7e-84; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 166 - 323
Target Start/End: Original strand, 56311922 - 56312079
Alignment:
| Q |
166 |
cacgagcatgacgtggttatgccagggtttcgtttccatccaactgaagaagaacttgtagagttctaccttcgccgtaaggtcgagggaaaacgtttca |
265 |
Q |
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| T |
56311922 |
cacgagcatgacgtggttatgccagggtttcgtttccatccaactgaagaagaacttgtagagttctaccttcgccgtaaggtcgagggaaaacgtttca |
56312021 |
T |
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| Q |
266 |
acgttgagcttattacttttctcgatctttatcgctatgacccttgggaacttcctgg |
323 |
Q |
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| T |
56312022 |
acgttgagcttattacttttctcgatctttatcgctatgacccttgggaacttcctgg |
56312079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 1 - 144
Target Start/End: Original strand, 56311751 - 56311894
Alignment:
| Q |
1 |
ttgttgttagttagttagagagagtggatggcaatagcagcagcaacatcatcacctaacatgagcagcatgagcttgagtcacgaagatggaacttcta |
100 |
Q |
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| T |
56311751 |
ttgttgttagttagttagagagagtggatggcaatagcagcagcaacatcatcacctaacatgagcagcatgagcttgagtcacgaagatggaacttcta |
56311850 |
T |
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| Q |
101 |
acgataatattaacaaaggagctacagctacagttacagtagta |
144 |
Q |
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| T |
56311851 |
acgataatattaacaaaggagctacagctacagttacagtagta |
56311894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 370 - 436
Target Start/End: Original strand, 56312123 - 56312189
Alignment:
| Q |
370 |
gagaacttcccctttcctaaagcaattctggaaacccnnnnnnnngttgccatccctctttgattta |
436 |
Q |
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| T |
56312123 |
gagaacttcccctttcctaaagcaattctggaaacccttttttttgttgccatccctctttgattta |
56312189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 187 - 224
Target Start/End: Original strand, 8449724 - 8449761
Alignment:
| Q |
187 |
ccagggtttcgtttccatccaactgaagaagaacttgt |
224 |
Q |
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| T |
8449724 |
ccagggtttcgtttccacccaactgatgaagaacttgt |
8449761 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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