View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10142_low_73 (Length: 222)

Name: NF10142_low_73
Description: NF10142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10142_low_73
NF10142_low_73
[»] chr6 (10 HSPs)
chr6 (17-203)||(31171123-31171304)
chr6 (17-147)||(27312249-27312379)
chr6 (17-147)||(32274448-32274578)
chr6 (17-146)||(5003897-5004026)
chr6 (17-146)||(8504835-8504964)
chr6 (17-151)||(29452675-29452810)
chr6 (17-151)||(7156370-7156492)
chr6 (17-100)||(2543142-2543225)
chr6 (64-147)||(12174714-12174797)
chr6 (47-151)||(18741957-18742061)
[»] chr3 (19 HSPs)
chr3 (17-151)||(21974159-21974293)
chr3 (17-151)||(21996590-21996724)
chr3 (17-147)||(18996981-18997111)
chr3 (17-147)||(18999520-18999650)
chr3 (17-151)||(22157268-22157402)
chr3 (17-147)||(29371671-29371801)
chr3 (17-147)||(32677610-32677740)
chr3 (17-147)||(39528763-39528893)
chr3 (18-147)||(1352130-1352259)
chr3 (17-147)||(38855331-38855461)
chr3 (17-147)||(41349504-41349634)
chr3 (17-147)||(28228450-28228580)
chr3 (17-147)||(39807112-39807242)
chr3 (17-147)||(55365922-55366052)
chr3 (17-147)||(36737967-36738097)
chr3 (17-146)||(39518422-39518551)
chr3 (26-146)||(29014832-29014952)
chr3 (17-146)||(32839964-32840092)
chr3 (17-167)||(49040977-49041125)
[»] chr5 (11 HSPs)
chr5 (17-146)||(29874969-29875098)
chr5 (17-147)||(12399079-12399209)
chr5 (17-147)||(34208552-34208682)
chr5 (17-147)||(4145708-4145838)
chr5 (17-147)||(23090312-23090442)
chr5 (22-146)||(3077612-3077736)
chr5 (17-147)||(4695295-4695425)
chr5 (27-146)||(42757953-42758072)
chr5 (17-94)||(22646042-22646119)
chr5 (96-146)||(12096416-12096466)
chr5 (96-151)||(41610629-41610684)
[»] chr7 (19 HSPs)
chr7 (17-151)||(4405119-4405253)
chr7 (17-147)||(17904177-17904307)
chr7 (17-147)||(46467468-46467598)
chr7 (17-147)||(9876277-9876407)
chr7 (17-147)||(26770193-26770323)
chr7 (17-147)||(29427297-29427427)
chr7 (17-147)||(37179465-37179594)
chr7 (17-146)||(6389747-6389876)
chr7 (17-147)||(6387825-6387955)
chr7 (17-147)||(29890959-29891089)
chr7 (17-151)||(41921987-41922121)
chr7 (38-147)||(31503091-31503200)
chr7 (58-151)||(9332371-9332464)
chr7 (52-139)||(19523863-19523950)
chr7 (19-166)||(33974486-33974636)
chr7 (64-151)||(12252079-12252166)
chr7 (17-141)||(9215595-9215722)
chr7 (91-151)||(49011065-49011125)
chr7 (107-146)||(46689878-46689917)
[»] chr8 (13 HSPs)
chr8 (17-146)||(28378962-28379091)
chr8 (17-147)||(33837862-33837992)
chr8 (17-147)||(2508929-2509059)
chr8 (17-147)||(45334409-45334539)
chr8 (17-147)||(25106225-25106355)
chr8 (17-147)||(9739999-9740129)
chr8 (33-147)||(13469654-13469768)
chr8 (17-146)||(38495605-38495734)
chr8 (38-146)||(27793345-27793453)
chr8 (17-117)||(2626371-2626472)
chr8 (34-151)||(32183630-32183749)
chr8 (47-124)||(3203414-3203490)
chr8 (96-151)||(25978971-25979026)
[»] chr2 (9 HSPs)
chr2 (17-147)||(15233769-15233899)
chr2 (17-147)||(43040982-43041112)
chr2 (17-151)||(41642901-41643038)
chr2 (23-146)||(31296098-31296221)
chr2 (17-147)||(41252429-41252559)
chr2 (17-146)||(35793040-35793168)
chr2 (18-147)||(44104683-44104819)
chr2 (17-146)||(31903513-31903641)
chr2 (96-166)||(21727667-21727734)
[»] chr1 (15 HSPs)
chr1 (17-147)||(9831517-9831647)
chr1 (18-147)||(46220273-46220402)
chr1 (17-147)||(10737834-10737964)
chr1 (17-147)||(47669133-47669263)
chr1 (23-147)||(4817283-4817407)
chr1 (22-146)||(8889457-8889581)
chr1 (17-146)||(3384728-3384855)
chr1 (17-147)||(18126865-18126994)
chr1 (17-140)||(48564838-48564961)
chr1 (25-147)||(4055498-4055620)
chr1 (17-146)||(7414222-7414351)
chr1 (64-146)||(1236210-1236292)
chr1 (17-126)||(39241186-39241296)
chr1 (82-147)||(1749521-1749586)
chr1 (47-138)||(26842462-26842551)
[»] chr4 (14 HSPs)
chr4 (17-146)||(45590757-45590886)
chr4 (17-147)||(34334346-34334476)
chr4 (17-146)||(49162117-49162245)
chr4 (17-151)||(18835715-18835851)
chr4 (17-147)||(8955909-8956039)
chr4 (17-151)||(33288538-33288672)
chr4 (69-147)||(30469353-30469431)
chr4 (17-94)||(36971116-36971192)
chr4 (58-151)||(39481913-39482006)
chr4 (17-167)||(50774191-50774345)
chr4 (17-146)||(33109031-33109163)
chr4 (47-146)||(26025686-26025784)
chr4 (96-146)||(36968353-36968403)
chr4 (111-147)||(36016293-36016329)
[»] scaffold0103 (1 HSPs)
scaffold0103 (17-147)||(44633-44764)


Alignment Details
Target: chr6 (Bit Score: 151; Significance: 5e-80; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 17 - 203
Target Start/End: Original strand, 31171123 - 31171304
Alignment:
Q  17 caaaggtcacaactattttaatagtttatggtgttttccaacaaagataaacttgagaaaacaataataaattcactacaacatctaatgttttggaata 116  Q
    |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31171123 caaaggtcacaactattttaatagtttaaggtgttttccaataaagataaacttgagaaaacaataataaattcactacaacatctaatgttttggaata 31171222  T
Q  117 tagttgaatttctaaatcatcaaaagaaaagaaattaaatggagggagtacagtttaatttacatgatcaattgttaatgagcttgc 203  Q
     | ||||||||||||||||||||||||||||     |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31171223 catttgaatttctaaatcatcaaaagaaaag-----aaatggagggagtacagtttaatttacatgatcaattgttaatgagcttgc 31171304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 17 - 147
Target Start/End: Original strand, 27312249 - 27312379
Alignment:
Q  17 caaaggtcacaactattttaatagtttatggtgttttccaacaaagataaacttgagaaaacaataataaattcactacaacatctaatgttttggaata 116  Q
    ||||||||||||||| ||||||||||||| |||||||||||||| | ||||||||||||||||||||||||||||||| |||||| ||||||||||||||    
T  27312249 caaaggtcacaactactttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaattcactaaaacatcaaatgttttggaata 27312348  T
Q  117 tagttgaatttctaaatcatcaaaagaaaag 147  Q
    |||||||| ||||||| ||||||||||||||    
T  27312349 tagttgaagttctaaaacatcaaaagaaaag 27312379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 17 - 147
Target Start/End: Complemental strand, 32274578 - 32274448
Alignment:
Q  17 caaaggtcacaactattttaatagtttatggtgttttccaacaaagataaacttgagaaaacaataataaattcactacaacatctaatgttttggaata 116  Q
    ||||||||||||||| ||||||||||||| |||||||||||||| | |||||||||||||||||||| |||||||||| |||||| || |||||||||||    
T  32274578 caaaggtcacaactactttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataacaaattcactaaaacatcaaaagttttggaata 32274479  T
Q  117 tagttgaatttctaaatcatcaaaagaaaag 147  Q
    |||||||| ||||||| ||||||||||||||    
T  32274478 tagttgaagttctaaaacatcaaaagaaaag 32274448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 17 - 146
Target Start/End: Complemental strand, 5004026 - 5003897
Alignment:
Q  17 caaaggtcacaactattttaatagtttatggtgttttccaacaaagataaacttgagaaaacaataataaattcactacaacatctaatgttttggaata 116  Q
    |||| |||| ||||| ||||||||||||| |||||||||||||| | ||||||||||||||||||||||||||||||| |||||| || |||||| ||||    
T  5004026 caaatgtcaaaactactttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaattcactaaaacatcaaaagttttgaaata 5003927  T
Q  117 tagttgaatttctaaatcatcaaaagaaaa 146  Q
    |||||||| ||||||| |||||||| ||||    
T  5003926 tagttgaagttctaaaacatcaaaaaaaaa 5003897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 17 - 146
Target Start/End: Original strand, 8504835 - 8504964
Alignment:
Q  17 caaaggtcacaactattttaatagtttatggtgttttccaacaaagataaacttgagaaaacaataataaattcactacaacatctaatgttttggaata 116  Q
    ||||||||||||||| ||||||||||||| ||||||| |||||| | ||||| |||||||| |||||||||||||||| |||||| || |||||| ||||    
T  8504835 caaaggtcacaactactttaatagtttattgtgtttttcaacaagggtaaacctgagaaaataataataaattcactaaaacatcaaaagttttgaaata 8504934  T
Q  117 tagttgaatttctaaatcatcaaaagaaaa 146  Q
    |||||||| ||||||| |||||||||||||    
T  8504935 tagttgaagttctaaaacatcaaaagaaaa 8504964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 17 - 151
Target Start/End: Original strand, 29452675 - 29452810
Alignment:
Q  17 caaaggtcacaactattttaatagtttatggtgttttccaacaaagataaacttgagaaaacaa-taataaattcactacaacatctaatgttttggaat 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||| |||||||||||||| |||||| |    ||| ||||    
T  29452675 caaaggtcacaactattttaatagtttatggtgttttccaacaagtgtaaacttgagaaaacaagtaataaattcactaaaacatcaagaaatttagaat 29452774  T
Q  116 atagttgaatttctaaatcatcaaaagaaaagaaat 151  Q
    ||||||||| ||||||| ||||| ||||||||||||    
T  29452775 atagttgaagttctaaaacatcagaagaaaagaaat 29452810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 17 - 151
Target Start/End: Original strand, 7156370 - 7156492
Alignment:
Q  17 caaaggtcacaactattttaatagtttatggtgttttccaacaaagataaacttgagaaaacaataataaattcactacaacatctaatgttttggaata 116  Q
    |||| ||||||| || ||||||||||||||||||||||||||||            |||||||||||||||||||||| ||||||||| |||||||||||    
T  7156370 caaatgtcacaattactttaatagtttatggtgttttccaacaa------------gaaaacaataataaattcactaaaacatctaaagttttggaata 7156457  T
Q  117 tagttgaatttctaaatcatcaaaagaaaagaaat 151  Q
    ||||||| | |||||| ||||||||||||||||||    
T  7156458 tagttgattgtctaaaacatcaaaagaaaagaaat 7156492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 17 - 100
Target Start/End: Complemental strand, 2543225 - 2543142
Alignment:
Q  17 caaaggtcacaactattttaatagtttatggtgttttccaacaaagataaacttgagaaaacaataataaattcactacaacat 100  Q
    |||| |||||||||| ||||||||||||| ||||||| |||||| | ||||||||||||||||||||||||||||||| |||||    
T  2543225 caaatgtcacaactactttaatagtttattgtgtttttcaacaagggtaaacttgagaaaacaataataaattcactaaaacat 2543142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 64 - 147
Target Start/End: Complemental strand, 12174797 - 12174714
Alignment:
Q  64 taaacttgagaaaacaataataaattcactacaacatctaatgttttggaatatagttgaatttctaaatcatcaaaagaaaag 147  Q
    ||||||||||||||||||||||||||||||| |||||| || ||||||||||||| || || ||||||| ||| ||||||||||    
T  12174797 taaacttgagaaaacaataataaattcactaaaacatcaaaagttttggaatatatttaaagttctaaaacattaaaagaaaag 12174714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 47 - 151
Target Start/End: Complemental strand, 18742061 - 18741957
Alignment:
Q  47 gtgttttccaacaaagataaacttgagaaaacaataataaattcactacaacatctaatgttttggaatatagttgaatttctaaatcatcaaaagaaaa 146  Q
    ||||||| |||||| | |||| ||||||| |||||| |||||  |||| |||||| ||||||||| |||| ||||||| | ||||| |||||||||||||    
T  18742061 gtgtttttcaacaagggtaaatttgagaatacaatattaaatatactaaaacatcaaatgttttgaaataaagttgaagtcctaaaacatcaaaagaaaa 18741962  T
Q  147 gaaat 151  Q
    |||||    
T  18741961 gaaat 18741957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 99; Significance: 5e-49; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 17 - 151
Target Start/End: Complemental strand, 21974293 - 21974159
Alignment:
Q  17 caaaggtcacaactattttaatagtttatggtgttttccaacaaagataaacttgagaaaacaataataaattcactacaacatctaatgttttggaata 116  Q
    ||||||||||||||| ||||||| |||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |||||| || |||||||||||    
T  21974293 caaaggtcacaactactttaatattttatggtgttttccaacaaaggtaaacctgagaaaacaataataaattcactaaaacatcaaaagttttggaata 21974194  T
Q  117 tagttgaatttctaaatcatcaaaagaaaagaaat 151  Q
    |||||||| ||||||| ||||||||||||||||||    
T  21974193 tagttgaaattctaaaacatcaaaagaaaagaaat 21974159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 17 - 151
Target Start/End: Complemental strand, 21996724 - 21996590
Alignment:
Q  17 caaaggtcacaactattttaatagtttatggtgttttccaacaaagataaacttgagaaaacaataataaattcactacaacatctaatgttttggaata 116  Q
    ||||||||||||||| ||||||| |||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |||||| || |||||||||||    
T  21996724 caaaggtcacaactactttaatattttatggtgttttccaacaaaggtaaacctgagaaaacaataataaattcactaaaacatcaaaagttttggaata 21996625  T
Q  117 tagttgaatttctaaatcatcaaaagaaaagaaat 151  Q
    |||||||| ||||||| ||||||||||||||||||    
T  21996624 tagttgaaattctaaaacatcaaaagaaaagaaat 21996590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 17 - 147
Target Start/End: Complemental strand, 18997111 - 18996981
Alignment:
Q  17 caaaggtcacaactattttaatagtttatggtgttttccaacaaagataaacttgagaaaacaataataaattcactacaacatctaatgttttggaata 116  Q
    |||| |||||||||| ||||||||||||| |||||||||||||| | ||||||||||||||||||||||||||||||| |||||| || |||||||||||    
T  18997111 caaaagtcacaactactttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaattcactaaaacatcaaaagttttggaata 18997012  T
Q  117 tagttgaatttctaaatcatcaaaagaaaag 147  Q
    |||||||| ||||||| ||||||||||||||    
T  18997011 tagttgaagttctaaaacatcaaaagaaaag 18996981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 17 - 147
Target Start/End: Complemental strand, 18999650 - 18999520
Alignment:
Q  17 caaaggtcacaactattttaatagtttatggtgttttccaacaaagataaacttgagaaaacaataataaattcactacaacatctaatgttttggaata 116  Q
    |||| |||||||||| ||||||||||||| |||||||||||||| | ||||||||||||||||||||||||||||||| |||||| || |||||||||||    
T  18999650 caaaagtcacaactactttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaattcactaaaacatcaaaagttttggaata 18999551  T
Q  117 tagttgaatttctaaatcatcaaaagaaaag 147  Q
    |||||||| ||||||| ||||||||||||||    
T  18999550 tagttgaagttctaaaacatcaaaagaaaag 18999520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 17 - 151
Target Start/End: Complemental strand, 22157402 - 22157268
Alignment:
Q  17 caaaggtcacaactattttaatagtttatggtgttttccaacaaagataaacttgagaaaacaataataaattcactacaacatctaatgttttggaata 116  Q
    ||||||||||||||| ||||||| |||||||||||||||||||||| ||||| ||||||||||||||||||||||||| || ||| || ||||| |||||    
T  22157402 caaaggtcacaactactttaatattttatggtgttttccaacaaaggtaaacctgagaaaacaataataaattcactaaaatatcaaaagttttagaata 22157303  T
Q  117 tagttgaatttctaaatcatcaaaagaaaagaaat 151  Q
    |||||||| ||||||| ||||||||||||||||||    
T  22157302 tagttgaagttctaaaacatcaaaagaaaagaaat 22157268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 17 - 147
Target Start/End: Original strand, 29371671 - 29371801
Alignment:
Q  17 caaaggtcacaactattttaatagtttatggtgttttccaacaaagataaacttgagaaaacaataataaattcactacaacatctaatgttttggaata 116  Q
    |||||||||||| || ||||||||||||| |||||||||||||| | ||||||||||||||||||||||||||||||| |||||| || |||||||||||    
T  29371671 caaaggtcacaagtactttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaattcactaaaacatcaaaagttttggaata 29371770  T
Q  117 tagttgaatttctaaatcatcaaaagaaaag 147  Q
    |||||||| ||||||| ||||||||||||||    
T  29371771 tagttgaagttctaaaacatcaaaagaaaag 29371801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 17 - 147
Target Start/End: Original strand, 32677610 - 32677740
Alignment:
Q  17 caaaggtcacaactattttaatagtttatggtgttttccaacaaagataaacttgagaaaacaataataaattcactacaacatctaatgttttggaata 116  Q
    ||||||||||||||| ||||||||||||| |||||||||||||| | ||||||||||||||||||||||||||||||| |||||| || ||||||| |||    
T  32677610 caaaggtcacaactactttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaattcactaaaacatcaaaagttttggtata 32677709  T
Q  117 tagttgaatttctaaatcatcaaaagaaaag 147  Q
    |||||||| ||||||| ||||||||||||||    
T  32677710 tagttgaagttctaaaacatcaaaagaaaag 32677740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 17 - 147
Target Start/End: Complemental strand, 39528893 - 39528763
Alignment:
Q  17 caaaggtcacaactattttaatagtttatggtgttttccaacaaagataaacttgagaaaacaataataaattcactacaacatctaatgttttggaata 116  Q
    ||||||||||||||| ||||||||||||| |||||||||||||| | |||||||||||||||||||| |||||||||| |||||| || |||||||||||    
T  39528893 caaaggtcacaactactttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataacaaattcactaaaacatcaaaagttttggaata 39528794  T
Q  117 tagttgaatttctaaatcatcaaaagaaaag 147  Q
    |||||||| ||||||| ||||||||||||||    
T  39528793 tagttgaagttctaaaacatcaaaagaaaag 39528763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 18 - 147
Target Start/End: Original strand, 1352130 - 1352259
Alignment:
Q  18 aaaggtcacaactattttaatagtttatggtgttttccaacaaagataaacttgagaaaacaataataaattcactacaacatctaatgttttggaatat 117  Q
    |||||||||||||| ||||||||||||| |||||||||||||| | |||||||||||||||||||| |||||||||| |||||| || ||||||||||||    
T  1352130 aaaggtcacaactactttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataacaaattcactaaaacatcaaaagttttggaatat 1352229  T
Q  118 agttgaatttctaaatcatcaaaagaaaag 147  Q
    ||||||| ||||||| ||||||||||||||    
T  1352230 agttgaagttctaaaacatcaaaagaaaag 1352259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 17 - 147
Target Start/End: Complemental strand, 38855461 - 38855331
Alignment:
Q  17 caaaggtcacaactattttaatagtttatggtgttttccaacaaagataaacttgagaaaacaataataaattcactacaacatctaatgttttggaata 116  Q
    ||||||||||||||| ||||||||||||||||||||| |||||| |||||| |||||||||||||||||||||||||| |||||| || |||||||||||    
T  38855461 caaaggtcacaactactttaatagtttatggtgtttttcaacaaggataaaattgagaaaacaataataaattcactaaaacatcaaaagttttggaata 38855362  T
Q  117 tagttgaatttctaaatcatcaaaagaaaag 147  Q
    |||||||  || |||| ||||||||||||||    
T  38855361 tagttgatgttttaaaacatcaaaagaaaag 38855331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 17 - 147
Target Start/End: Original strand, 41349504 - 41349634
Alignment:
Q  17 caaaggtcacaactattttaatagtttatggtgttttccaacaaagataaacttgagaaaacaataataaattcactacaacatctaatgttttggaata 116  Q
    ||||||||||||||| ||||||||||||| |||||||||||||| | |||||||||||||||||||| |||||||||| |||||| || ||||| |||||    
T  41349504 caaaggtcacaactactttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataacaaattcactaaaacatcaaaagttttagaata 41349603  T
Q  117 tagttgaatttctaaatcatcaaaagaaaag 147  Q
    |||||||| ||||||| ||||||||||||||    
T  41349604 tagttgaagttctaaaacatcaaaagaaaag 41349634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 17 - 147
Target Start/End: Complemental strand, 28228580 - 28228450
Alignment:
Q  17 caaaggtcacaactattttaatagtttatggtgttttccaacaaagataaacttgagaaaacaataataaattcactacaacatctaatgttttggaata 116  Q
    |||| |||||| ||| ||||||||||||| || ||||||||||| | ||||||||||||||||||||||||||||||| |||||| || |||||||||||    
T  28228580 caaatgtcacagctactttaatagtttattgtattttccaacaagggtaaacttgagaaaacaataataaattcactaaaacatcaaaagttttggaata 28228481  T
Q  117 tagttgaatttctaaatcatcaaaagaaaag 147  Q
    |||||||| ||||||| ||||||||||||||    
T  28228480 tagttgaagttctaaaacatcaaaagaaaag 28228450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 17 - 147
Target Start/End: Original strand, 39807112 - 39807242
Alignment:
Q  17 caaaggtcacaactattttaatagtttatggtgttttccaacaaagataaacttgagaaaacaataataaattcactacaacatctaatgttttggaata 116  Q
    ||||||||||||||| ||||||||||||| |||||||||||| | | |||||||||||||||||||| |||||||||| |||||| || |||||| ||||    
T  39807112 caaaggtcacaactactttaatagtttattgtgttttccaacgagggtaaacttgagaaaacaataacaaattcactaaaacatcaaaagttttgtaata 39807211  T
Q  117 tagttgaatttctaaatcatcaaaagaaaag 147  Q
    |||||||| ||||||| ||||||||||||||    
T  39807212 tagttgaagttctaaaacatcaaaagaaaag 39807242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 17 - 147
Target Start/End: Complemental strand, 55366052 - 55365922
Alignment:
Q  17 caaaggtcacaactattttaatagtttatggtgttttccaacaaagataaacttgagaaaacaataataaattcactacaacatctaatgttttggaata 116  Q
    ||||||||||||||| ||||||||||||| |||||||| ||||| | ||||||||||||||||||||||||||||||| |||||| ||   |||| ||||    
T  55366052 caaaggtcacaactactttaatagtttattgtgttttctaacaagggtaaacttgagaaaacaataataaattcactaaaacatcaaaaaatttgaaata 55365953  T
Q  117 tagttgaatttctaaatcatcaaaagaaaag 147  Q
    |||||||| ||||||| ||||||||||||||    
T  55365952 tagttgaagttctaaaacatcaaaagaaaag 55365922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 17 - 147
Target Start/End: Original strand, 36737967 - 36738097
Alignment:
Q  17 caaaggtcacaactattttaatagtttatggtgttttccaacaaagataaacttgagaaaacaataataaattcactacaacatctaatgttttggaata 116  Q
    |||| |||||||||| ||||||||||||| ||||||||||||||   ||||||||||||||||||||||||||||||| |||||| || |||||  ||||    
T  36737967 caaatgtcacaactactttaatagtttattgtgttttccaacaagagtaaacttgagaaaacaataataaattcactaaaacatcaaaagttttaaaata 36738066  T
Q  117 tagttgaatttctaaatcatcaaaagaaaag 147  Q
    ||||| || ||||||| ||||||||||||||    
T  36738067 tagttaaagttctaaaacatcaaaagaaaag 36738097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 17 - 146
Target Start/End: Complemental strand, 39518551 - 39518422
Alignment:
Q  17 caaaggtcacaactattttaatagtttatggtgttttccaacaaagataaacttgagaaaacaataataaattcactacaacatctaatgttttggaata 116  Q
    |||| |||| ||||| ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| || ||| || |||||| ||||    
T  39518551 caaatgtcataactactttaatagtttattgtgttttccaacaaggataaacttgagaaaacaataataaattcactaaaatatcaaaagttttgaaata 39518452  T
Q  117 tagttgaatttctaaatcatcaaaagaaaa 146  Q
    |||||||| || |||| |||||||| ||||    
T  39518451 tagttgaagttttaaaacatcaaaaaaaaa 39518422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 26 - 146
Target Start/End: Original strand, 29014832 - 29014952
Alignment:
Q  26 caactattttaatagtttatggtgttttccaacaaagataaacttgagaaaacaataataaattcactacaacatctaatgttttggaatatagttgaat 125  Q
    |||||| ||||||||||||  |||||||||||||| | ||||||||||||||||||||||||||||||| |||||| || |||||||||||||||||||     
T  29014832 caactactttaatagtttaatgtgttttccaacaagggtaaacttgagaaaacaataataaattcactaaaacatcaaaagttttggaatatagttgaag 29014931  T
Q  126 ttctaaatcatcaaaagaaaa 146  Q
    ||||||| ||| |||| ||||    
T  29014932 ttctaaaacataaaaaaaaaa 29014952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 17 - 146
Target Start/End: Complemental strand, 32840092 - 32839964
Alignment:
Q  17 caaaggtcacaactattttaatagtttatggtgttttccaacaaagataaacttgagaaaacaataataaattcactacaacatctaatgttttggaata 116  Q
    |||| |||||||||||||||||||||||| |||||||| ||||| || |||||| |||||| |||||| ||||||||| |||||| ||   |||  ||||    
T  32840092 caaatgtcacaactattttaatagtttattgtgttttctaacaaggacaaacttaagaaaataataat-aattcactaaaacatcaaaaaatttaaaata 32839994  T
Q  117 tagttgaatttctaaatcatcaaaagaaaa 146  Q
    |||||||| |||||||  || |||||||||    
T  32839993 tagttgaagttctaaaatataaaaagaaaa 32839964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 167
Target Start/End: Original strand, 49040977 - 49041125
Alignment:
Q  17 caaaggtcacaactattttaatagttt-atggt--gttttccaacaaagataaacttgagaaaacaataataaattcactacaacatctaatgttttgga 113  Q
    |||||||| |||||  ||||||||||| |||||  ||||| |||||| | ||||| || |||||  ||| |||||  |||| |||||| ||| |||||||    
T  49040977 caaaggtcccaactcctttaatagttttatggtttgtttttcaacaagggtaaacgtgggaaaa--atattaaatatactaaaacatcaaatattttgga 49041074  T
Q  114 atatagttgaatttctaaatcatcaaaagaaaagaaattaaatggagggagtac 167  Q
    | ||||||||| ||||||| ||||||||||||| ||   |||||||||||||||    
T  49041075 acatagttgaagttctaaaacatcaaaagaaaaaaa---aaatggagggagtac 49041125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 98; Significance: 2e-48; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 17 - 146
Target Start/End: Complemental strand, 29875098 - 29874969
Alignment:
Q  17 caaaggtcacaactattttaatagtttatggtgttttccaacaaagataaacttgagaaaacaataataaattcactacaacatctaatgttttggaata 116  Q
    ||||||||||||||| ||||||||||||| |||||||||||||| | ||||||||||||||||||||||||||||||| |||||| ||||||||||||||    
T  29875098 caaaggtcacaactactttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaattcactaaaacatcaaatgttttggaata 29874999  T
Q  117 tagttgaatttctaaatcatcaaaagaaaa 146  Q
    |||||||| ||||||| |||||||||||||    
T  29874998 tagttgaagttctaaaacatcaaaagaaaa 29874969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 17 - 147
Target Start/End: Original strand, 12399079 - 12399209
Alignment:
Q  17 caaaggtcacaactattttaatagtttatggtgttttccaacaaagataaacttgagaaaacaataataaattcactacaacatctaatgttttggaata 116  Q
    ||||||||||||||| ||||||||||||| |||||||||||||| | |||||||||||||||||||| |||||||||| |||||| || |||||||||||    
T  12399079 caaaggtcacaactactttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataacaaattcactaaaacatcaaaagttttggaata 12399178  T
Q  117 tagttgaatttctaaatcatcaaaagaaaag 147  Q
    |||||||| ||||||| ||||||||||||||    
T  12399179 tagttgaagttctaaaacatcaaaagaaaag 12399209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 17 - 147
Target Start/End: Complemental strand, 34208682 - 34208552
Alignment:
Q  17 caaaggtcacaactattttaatagtttatggtgttttccaacaaagataaacttgagaaaacaataataaattcactacaacatctaatgttttggaata 116  Q
    ||||||||||||||| ||||||||||||| |||||||||||||| | |||||||||||||||||||| |||||||||| |||||| || |||||||||||    
T  34208682 caaaggtcacaactactttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataacaaattcactaaaacatcaaaagttttggaata 34208583  T
Q  117 tagttgaatttctaaatcatcaaaagaaaag 147  Q
    |||||||| ||||||| ||||||||||||||    
T  34208582 tagttgaagttctaaaacatcaaaagaaaag 34208552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 17 - 147
Target Start/End: Complemental strand, 4145838 - 4145708
Alignment:
Q  17 caaaggtcacaactattttaatagtttatggtgttttccaacaaagataaacttgagaaaacaataataaattcactacaacatctaatgttttggaata 116  Q
    ||||||||||||||| ||||||||||||| |||||||||||||| | ||||||| |||||||||||| |||||||||| |||||| || |||||||||||    
T  4145838 caaaggtcacaactactttaatagtttattgtgttttccaacaagggtaaacttaagaaaacaataacaaattcactaaaacatcaaaagttttggaata 4145739  T
Q  117 tagttgaatttctaaatcatcaaaagaaaag 147  Q
    ||||| || ||||||| ||||||||||||||    
T  4145738 tagttaaagttctaaaacatcaaaagaaaag 4145708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 17 - 147
Target Start/End: Complemental strand, 23090442 - 23090312
Alignment:
Q  17 caaaggtcacaactattttaatagtttatggtgttttccaacaaagataaacttgagaaaacaataataaattcactacaacatctaatgttttggaata 116  Q
    ||||||||||||||| ||||||||||||| |||||||||||||| | |||||||||||||||||||| |||||||||| |||||| ||  ||||||||||    
T  23090442 caaaggtcacaactactttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataacaaattcactaaaacatcaaaaattttggaata 23090343  T
Q  117 tagttgaatttctaaatcatcaaaagaaaag 147  Q
     ||||||| ||||||| ||||||||||||||    
T  23090342 cagttgaagttctaaaacatcaaaagaaaag 23090312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 22 - 146
Target Start/End: Complemental strand, 3077736 - 3077612
Alignment:
Q  22 gtcacaactattttaatagtttatggtgttttccaacaaagataaacttgagaaaacaataataaattcactacaacatctaatgttttggaatatagtt 121  Q
    |||||||||| ||||||||||||| |||||||||||||| |||||||||||||||||||||| |||||||||| |||||| || |||||  |||||||||    
T  3077736 gtcacaactactttaatagtttattgtgttttccaacaaggataaacttgagaaaacaataacaaattcactaaaacatcaaaagttttaaaatatagtt 3077637  T
Q  122 gaatttctaaatcatcaaaagaaaa 146  Q
    ||| ||||||| |||||||||||||    
T  3077636 gaaattctaaaacatcaaaagaaaa 3077612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 17 - 147
Target Start/End: Original strand, 4695295 - 4695425
Alignment:
Q  17 caaaggtcacaactattttaatagtttatggtgttttccaacaaagataaacttgagaaaacaataataaattcactacaacatctaatgttttggaata 116  Q
    |||| |||||||||| ||||||||||||| |||||||||||||| | |||||||||||||||||||| |||||||||| |||||| || |||||| ||||    
T  4695295 caaatgtcacaactactttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataacaaattcactaaaacatcaaaagttttgaaata 4695394  T
Q  117 tagttgaatttctaaatcatcaaaagaaaag 147  Q
    |||||||| |||||||  |||||||||||||    
T  4695395 tagttgaagttctaaaaaatcaaaagaaaag 4695425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 27 - 146
Target Start/End: Original strand, 42757953 - 42758072
Alignment:
Q  27 aactattttaatagtttatggtgttttccaacaaagataaacttgagaaaacaataataaattcactacaacatctaatgttttggaatatagttgaatt 126  Q
    ||||| ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |||||| || |||||| || ||||||||| |    
T  42757953 aactactttaatagtttatcgtgttttccaacaaggataaacttgagaaaacaataataaattcactaaaacatcaaaagttttgaaaaatagttgaagt 42758052  T
Q  127 tctaaatcatcaaaagaaaa 146  Q
    |||||| ||| |||| ||||    
T  42758053 tctaaaacataaaaaaaaaa 42758072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 17 - 94
Target Start/End: Original strand, 22646042 - 22646119
Alignment:
Q  17 caaaggtcacaactattttaatagtttatggtgttttccaacaaagataaacttgagaaaacaataataaattcacta 94  Q
    |||| |||||||||| ||||||||||||||||||||| |||||| | |||||||||||||||||||||||||||||||    
T  22646042 caaaagtcacaactactttaatagtttatggtgtttttcaacaaggttaaacttgagaaaacaataataaattcacta 22646119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 96 - 146
Target Start/End: Original strand, 12096416 - 12096466
Alignment:
Q  96 aacatctaatgttttggaatatagttgaatttctaaatcatcaaaagaaaa 146  Q
    |||||| |||||||||||||||||||||| | ||||| |||||||||||||    
T  12096416 aacatcaaatgttttggaatatagttgaagtcctaaaacatcaaaagaaaa 12096466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 96 - 151
Target Start/End: Original strand, 41610629 - 41610684
Alignment:
Q  96 aacatctaatgttttggaatatagttgaatttctaaatcatcaaaagaaaagaaat 151  Q
    |||||| || ||||||||||| |||| || ||||||| ||||||||||||||||||    
T  41610629 aacatcaaaagttttggaataaagtttaagttctaaaacatcaaaagaaaagaaat 41610684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 95; Significance: 1e-46; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 17 - 151
Target Start/End: Complemental strand, 4405253 - 4405119
Alignment:
Q  17 caaaggtcacaactattttaatagtttatggtgttttccaacaaagataaacttgagaaaacaataataaattcactacaacatctaatgttttggaata 116  Q
    ||||||||||||||| ||||||| |||||||||||||||||||| |||||| |||||||||||||||||||||||||| |||||| |||||||| |||||    
T  4405253 caaaggtcacaactactttaataatttatggtgttttccaacaaggataaaattgagaaaacaataataaattcactaaaacatcaaatgttttagaata 4405154  T
Q  117 tagttgaatttctaaatcatcaaaagaaaagaaat 151  Q
    |||||||| || |||| ||||||||||||||||||    
T  4405153 tagttgaagttttaaaacatcaaaagaaaagaaat 4405119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 17 - 147
Target Start/End: Complemental strand, 17904307 - 17904177
Alignment:
Q  17 caaaggtcacaactattttaatagtttatggtgttttccaacaaagataaacttgagaaaacaataataaattcactacaacatctaatgttttggaata 116  Q
    ||||||||||||||| ||||||||||||| |||||||||||||| | ||||||||||||||||||||||||||||||| |||||| || |||||||||||    
T  17904307 caaaggtcacaactactttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaattcactaaaacatcaaaagttttggaata 17904208  T
Q  117 tagttgaatttctaaatcatcaaaagaaaag 147  Q
    |||||||| ||||||| ||||||||||||||    
T  17904207 tagttgaagttctaaaacatcaaaagaaaag 17904177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 17 - 147
Target Start/End: Original strand, 46467468 - 46467598
Alignment:
Q  17 caaaggtcacaactattttaatagtttatggtgttttccaacaaagataaacttgagaaaacaataataaattcactacaacatctaatgttttggaata 116  Q
    |||||||| |||||| ||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| |||||| || |||||||||||    
T  46467468 caaaggtcgcaactactttaatagtttattgtgttttccaacaaaggtaaacttgagaaaacaataataaattcactaaaacatcaaaagttttggaata 46467567  T
Q  117 tagttgaatttctaaatcatcaaaagaaaag 147  Q
    |||||||| ||||||| ||||||||||||||    
T  46467568 tagttgaagttctaaaacatcaaaagaaaag 46467598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 17 - 147
Target Start/End: Complemental strand, 9876407 - 9876277
Alignment:
Q  17 caaaggtcacaactattttaatagtttatggtgttttccaacaaagataaacttgagaaaacaataataaattcactacaacatctaatgttttggaata 116  Q
    ||||||||||||||| |||||||||||||||||||||||||||| | |||| |||||||||||||||||||||||||| |||||| || |||||||||||    
T  9876407 caaaggtcacaactactttaatagtttatggtgttttccaacaagggtaaaattgagaaaacaataataaattcactaaaacatcaaaagttttggaata 9876308  T
Q  117 tagttgaatttctaaatcatcaaaagaaaag 147  Q
    |||||||| || |||| ||||||||||||||    
T  9876307 tagttgaagttttaaaacatcaaaagaaaag 9876277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 17 - 147
Target Start/End: Complemental strand, 26770323 - 26770193
Alignment:
Q  17 caaaggtcacaactattttaatagtttatggtgttttccaacaaagataaacttgagaaaacaataataaattcactacaacatctaatgttttggaata 116  Q
    ||||||||||||||| ||||||||||||| |||||||||||||| | ||||||||||||||||||||||||||||||| |||||| || ||||||||||     
T  26770323 caaaggtcacaactactttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaattcactaaaacatcaaaagttttggaatt 26770224  T
Q  117 tagttgaatttctaaatcatcaaaagaaaag 147  Q
    |||||||| ||||||| ||||||||||||||    
T  26770223 tagttgaagttctaaaacatcaaaagaaaag 26770193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 17 - 147
Target Start/End: Original strand, 29427297 - 29427427
Alignment:
Q  17 caaaggtcacaactattttaatagtttatggtgttttccaacaaagataaacttgagaaaacaataataaattcactacaacatctaatgttttggaata 116  Q
    ||||| ||||||||| ||||||||||||| |||||||||||||| | ||||||||||||||||||||||||||||||| |||||| || |||||||||||    
T  29427297 caaagatcacaactactttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaattcactaaaacatcaaaagttttggaata 29427396  T
Q  117 tagttgaatttctaaatcatcaaaagaaaag 147  Q
    |||||||| ||||||| ||||||||||||||    
T  29427397 tagttgaagttctaaaacatcaaaagaaaag 29427427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 17 - 147
Target Start/End: Original strand, 37179465 - 37179594
Alignment:
Q  17 caaaggtcacaactattttaatagtttatggtgttttccaacaaagataaacttgagaaaacaataataaattcactacaacatctaatgttttggaata 116  Q
    ||||||||||||||| ||||||||||||| |||||||||||||| | ||||||| ||||||||||||||||||||||| |||||| || |||||||||||    
T  37179465 caaaggtcacaactactttaatagtttattgtgttttccaacaagggtaaactt-agaaaacaataataaattcactaaaacatcaaaagttttggaata 37179563  T
Q  117 tagttgaatttctaaatcatcaaaagaaaag 147  Q
    |||||||| ||||||| ||||||||||||||    
T  37179564 tagttgaagttctaaaacatcaaaagaaaag 37179594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 17 - 146
Target Start/End: Complemental strand, 6389876 - 6389747
Alignment:
Q  17 caaaggtcacaactattttaatagtttatggtgttttccaacaaagataaacttgagaaaacaataataaattcactacaacatctaatgttttggaata 116  Q
    |||| |||||||||| ||||||||||||| ||||||||||||||   ||||||||||||||||||||||||||||||| |||||| || |||||||||||    
T  6389876 caaatgtcacaactactttaatagtttattgtgttttccaacaagagtaaacttgagaaaacaataataaattcactaaaacatcaaaagttttggaata 6389777  T
Q  117 tagttgaatttctaaatcatcaaaagaaaa 146  Q
    |||||||| ||||||| |||||||| ||||    
T  6389776 tagttgaagttctaaaacatcaaaacaaaa 6389747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 17 - 147
Target Start/End: Original strand, 6387825 - 6387955
Alignment:
Q  17 caaaggtcacaactattttaatagtttatggtgttttccaacaaagataaacttgagaaaacaataataaattcactacaacatctaatgttttggaata 116  Q
    |||| |||||||||| ||||||||||||| |||||||||||||| | ||||||||| |||||||||| |||||||||| |||||| || |||||||||||    
T  6387825 caaatgtcacaactactttaatagtttattgtgttttccaacaagggtaaacttgataaaacaataacaaattcactaaaacatcaaaagttttggaata 6387924  T
Q  117 tagttgaatttctaaatcatcaaaagaaaag 147  Q
    |||||| | ||||||| ||||||||||||||    
T  6387925 tagttgcagttctaaaacatcaaaagaaaag 6387955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 17 - 147
Target Start/End: Original strand, 29890959 - 29891089
Alignment:
Q  17 caaaggtcacaactattttaatagtttatggtgttttccaacaaagataaacttgagaaaacaataataaattcactacaacatctaatgttttggaata 116  Q
    |||| |||||||||| ||||||||||||| |||||||||| ||| |||||||||||||||||||| |||||||||||| |||||| ||  ||||||||||    
T  29890959 caaaagtcacaactactttaatagtttattgtgttttccatcaaggataaacttgagaaaacaatcataaattcactaaaacatcaaaaattttggaata 29891058  T
Q  117 tagttgaatttctaaatcatcaaaagaaaag 147  Q
    |||||||| || |||| ||||||||||||||    
T  29891059 tagttgaagttttaaaacatcaaaagaaaag 29891089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 17 - 151
Target Start/End: Original strand, 41921987 - 41922121
Alignment:
Q  17 caaaggtcacaactattttaatagtttatggtgttttccaacaaagataaacttgagaaaacaataataaattcactacaacatctaatgttttggaata 116  Q
    |||||||  |||||| ||||||||||||| ||||||| |||||| | ||||||||| ||||||||| ||||||||||| |||||| || |||||||||||    
T  41921987 caaaggttgcaactactttaatagtttattgtgtttttcaacaagggtaaacttgataaaacaatattaaattcactaaaacatcaaaagttttggaata 41922086  T
Q  117 tagttgaatttctaaatcatcaaaagaaaagaaat 151  Q
    |||||||| ||||||| ||||||||||||||||||    
T  41922087 tagttgaagttctaaaacatcaaaagaaaagaaat 41922121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 38 - 147
Target Start/End: Original strand, 31503091 - 31503200
Alignment:
Q  38 tagtttatggtgttttccaacaaagataaacttgagaaaacaataataaattcactacaacatctaatgttttggaatatagttgaatttctaaatcatc 137  Q
    |||||||| |||||||||||||| | ||||||| ||||||||||||||||||||||| |||||| || ||||||||||||||||||| ||||||| ||||    
T  31503091 tagtttatagtgttttccaacaagggtaaacttaagaaaacaataataaattcactaaaacatcaaaagttttggaatatagttgaagttctaaaacatc 31503190  T
Q  138 aaaagaaaag 147  Q
    ||||||||||    
T  31503191 aaaagaaaag 31503200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 58 - 151
Target Start/End: Complemental strand, 9332464 - 9332371
Alignment:
Q  58 caaagataaacttgagaaaacaataataaattcactacaacatctaatgttttggaatatagttgaatttctaaatcatcaaaagaaaagaaat 151  Q
    ||||| ||||| ||||||||||||||||||||||||| |||||| || |||||| |||||||||||| ||||||| ||||||||||||| ||||    
T  9332464 caaaggtaaacctgagaaaacaataataaattcactaaaacatcaaaagttttgaaatatagttgaagttctaaaacatcaaaagaaaaaaaat 9332371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 52 - 139
Target Start/End: Original strand, 19523863 - 19523950
Alignment:
Q  52 ttccaacaaagataaacttgagaaaacaataataaattcactacaacatctaatgttttggaatatagttgaatttctaaatcatcaa 139  Q
    ||||||||| | ||||||||| ||||||||||||||||||||| |||||| ||  |||||||||||||||||| ||||||| ||||||    
T  19523863 ttccaacaagggtaaacttgataaaacaataataaattcactaaaacatcaaaaattttggaatatagttgaagttctaaaacatcaa 19523950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 19 - 166
Target Start/End: Complemental strand, 33974636 - 33974486
Alignment:
Q  19 aaggtcacaactattttaatagttt-atggtgt--tttccaacaaagataaacttgagaaaacaataataaattcactacaacatctaatgttttggaat 115  Q
    ||||||||||||  ||||||||||| |||||||  ||| |||||| | |||||||| ||||| |||| |||||  |||| |||||  ||| |||||||||    
T  33974636 aaggtcacaactcctttaatagttttatggtgtgtttttcaacaagggtaaacttgggaaaaaaatattaaatatactaaaacataaaatattttggaat 33974537  T
Q  116 atagttgaatttctaaatcatcaaaagaaaagaaattaaatggagggagta 166  Q
    ||||||||| ||| ||| |||||||||||||  ||  ||||||||||||||    
T  33974536 atagttgaagttcgaaaacatcaaaagaaaaagaaaaaaatggagggagta 33974486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 64 - 151
Target Start/End: Complemental strand, 12252166 - 12252079
Alignment:
Q  64 taaacttgagaaaacaataataaattcactacaacatctaatgttttggaatatagttgaatttctaaatcatcaaaagaaaagaaat 151  Q
    |||||||| |||||||| | |||||  | || |||||| ||| |||||||||||||||||| ||||||| ||||||||||||| ||||    
T  12252166 taaacttgggaaaacaagattaaatatattagaacatcaaatattttggaatatagttgaagttctaaaacatcaaaagaaaaaaaat 12252079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 141
Target Start/End: Original strand, 9215595 - 9215722
Alignment:
Q  17 caaaggtcacaactattttaatagttt-atggtgt--tttccaacaaagataaacttgagaaaacaataataaattcactacaacatctaatgttttgga 113  Q
    ||||||||||||||  ||||||| ||| |||||||  ||| |||||| | |||| |||| |||| |||| || ||  |||| |||||  ||| |||||||    
T  9215595 caaaggtcacaactcctttaataattttatggtgtctttttcaacaagggtaaatttgaaaaaaaaatattacatatactaaaacattaaatattttgga 9215694  T
Q  114 atatagttgaatttctaaatcatcaaaa 141  Q
    ||||||||||| ||||||| ||||||||    
T  9215695 atatagttgaagttctaaaacatcaaaa 9215722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 151
Target Start/End: Original strand, 49011065 - 49011125
Alignment:
Q  91 actacaacatctaatgttttggaatatagttgaatttctaaatcatcaaaagaaaagaaat 151  Q
    |||| |||||| ||||||||| |||||||||||| | ||||| ||||||||||||| ||||    
T  49011065 actaaaacatcaaatgttttgaaatatagttgaagtcctaaaacatcaaaagaaaaaaaat 49011125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 107 - 146
Target Start/End: Complemental strand, 46689917 - 46689878
Alignment:
Q  107 ttttggaatatagttgaatttctaaatcatcaaaagaaaa 146  Q
    |||||||||||||||||| ||||||| |||||||||||||    
T  46689917 ttttggaatatagttgaagttctaaaacatcaaaagaaaa 46689878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 94; Significance: 5e-46; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 17 - 146
Target Start/End: Complemental strand, 28379091 - 28378962
Alignment:
Q  17 caaaggtcacaactattttaatagtttatggtgttttccaacaaagataaacttgagaaaacaataataaattcactacaacatctaatgttttggaata 116  Q
    ||||||||||||||| ||||||||||||| |||||||||||||| | ||||||||||||||||||||||||||||||| |||||| || |||||||||||    
T  28379091 caaaggtcacaactactttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaattcactaaaacatcaaaagttttggaata 28378992  T
Q  117 tagttgaatttctaaatcatcaaaagaaaa 146  Q
    |||||||| ||||||| |||||||||||||    
T  28378991 tagttgaagttctaaaacatcaaaagaaaa 28378962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 17 - 147
Target Start/End: Original strand, 33837862 - 33837992
Alignment:
Q  17 caaaggtcacaactattttaatagtttatggtgttttccaacaaagataaacttgagaaaacaataataaattcactacaacatctaatgttttggaata 116  Q
    ||||||||||||||| ||||||||||||| |||||||||||||| | |||||||||||||||||||| |||||||||| |||||| || |||||||||||    
T  33837862 caaaggtcacaactactttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataacaaattcactaaaacatcaaaagttttggaata 33837961  T
Q  117 tagttgaatttctaaatcatcaaaagaaaag 147  Q
    |||||||| ||||||| ||||||||||||||    
T  33837962 tagttgaagttctaaaacatcaaaagaaaag 33837992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 17 - 147
Target Start/End: Original strand, 2508929 - 2509059
Alignment:
Q  17 caaaggtcacaactattttaatagtttatggtgttttccaacaaagataaacttgagaaaacaataataaattcactacaacatctaatgttttggaata 116  Q
    ||||||||||||||| ||||||||||||  |||||||||||||| | |||||||||||||||||||| |||||||||| |||||| || |||||||||||    
T  2508929 caaaggtcacaactactttaatagtttactgtgttttccaacaagggtaaacttgagaaaacaataacaaattcactaaaacatcaaaagttttggaata 2509028  T
Q  117 tagttgaatttctaaatcatcaaaagaaaag 147  Q
    |||||||| ||||||| ||||||||||||||    
T  2509029 tagttgaagttctaaaacatcaaaagaaaag 2509059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 17 - 147
Target Start/End: Original strand, 45334409 - 45334539
Alignment:
Q  17 caaaggtcacaactattttaatagtttatggtgttttccaacaaagataaacttgagaaaacaataataaattcactacaacatctaatgttttggaata 116  Q
    ||||||||||||||| ||||||||||||| |||||||||||||| | ||||||||| |||||||||| |||||||||| |||||| || |||||||||||    
T  45334409 caaaggtcacaactactttaatagtttattgtgttttccaacaagggtaaacttgaaaaaacaataacaaattcactaaaacatcaaaagttttggaata 45334508  T
Q  117 tagttgaatttctaaatcatcaaaagaaaag 147  Q
    ||||| || ||||||| ||||||||||||||    
T  45334509 tagttaaagttctaaaacatcaaaagaaaag 45334539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 17 - 147
Target Start/End: Complemental strand, 25106355 - 25106225
Alignment:
Q  17 caaaggtcacaactattttaatagtttatggtgttttccaacaaagataaacttgagaaaacaataataaattcactacaacatctaatgttttggaata 116  Q
    |||| |||||||||| ||||||||||||| |||||||||| ||| | ||||||||| |||||||| |||||||||||| |||||| ||  ||||||||||    
T  25106355 caaaagtcacaactactttaatagtttattgtgttttccatcaagggtaaacttgaaaaaacaatcataaattcactaaaacatcaaaaattttggaata 25106256  T
Q  117 tagttgaatttctaaatcatcaaaagaaaag 147  Q
    |||||||| ||||||| ||||||||||||||    
T  25106255 tagttgaagttctaaaacatcaaaagaaaag 25106225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 17 - 147
Target Start/End: Complemental strand, 9740129 - 9739999
Alignment:
Q  17 caaaggtcacaactattttaatagtttatggtgttttccaacaaagataaacttgagaaaacaataataaattcactacaacatctaatgttttggaata 116  Q
    |||| |||||||||| ||||||||||||| ||||||| |||||| ||||||||||||||| |||||||||||||| || |||||| || |||||| ||||    
T  9740129 caaatgtcacaactactttaatagtttattgtgtttttcaacaaggataaacttgagaaagcaataataaattcagtaaaacatcaaaagttttgaaata 9740030  T
Q  117 tagttgaatttctaaatcatcaaaagaaaag 147  Q
    ||  |||| ||||||| ||||||||||||||    
T  9740029 tacatgaagttctaaaacatcaaaagaaaag 9739999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 33 - 147
Target Start/End: Original strand, 13469654 - 13469768
Alignment:
Q  33 tttaatagtttatggtgttttccaacaaagataaacttgagaaaacaataataaattcactacaacatctaatgttttggaatatagttgaatttctaaa 132  Q
    ||||||||||||| |||||||||||||| | |||||||||||||||||| ||||||| |||| || ||| || ||||||||||||||||||| |||||||    
T  13469654 tttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaattataaatttactaaaatatcaaaagttttggaatatagttgaagttctaaa 13469753  T
Q  133 tcatcaaaagaaaag 147  Q
     ||||||||||||||    
T  13469754 acatcaaaagaaaag 13469768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 17 - 146
Target Start/End: Original strand, 38495605 - 38495734
Alignment:
Q  17 caaaggtcacaactattttaatagtttatggtgttttccaacaaagataaacttgagaaaacaataataaattcactacaacatctaatgttttggaata 116  Q
    |||| |||| ||||| ||||||||||||| |||||||||||||| | ||||||||||||||||||||||||||||| | |||||| ||  |||| |||||    
T  38495605 caaatgtcataactactttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaattcaccaaaacatcaaaaattttagaata 38495704  T
Q  117 tagttgaatttctaaatcatcaaaagaaaa 146  Q
    |||||||| ||||||| ||||| |||||||    
T  38495705 tagttgaagttctaaaacatcacaagaaaa 38495734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 38 - 146
Target Start/End: Original strand, 27793345 - 27793453
Alignment:
Q  38 tagtttatggtgttttccaacaaagataaacttgagaaaacaataataaattcactacaacatctaatgttttggaatatagttgaatttctaaatcatc 137  Q
    |||||||| ||||||||||||||   ||||||||||||||||||||||||||||||| |||||  || |||||||||||||||||||  |||||| ||||    
T  27793345 tagtttattgtgttttccaacaagagtaaacttgagaaaacaataataaattcactaaaacattaaaagttttggaatatagttgaagatctaaaacatc 27793444  T
Q  138 aaaagaaaa 146  Q
    |||||||||    
T  27793445 aaaagaaaa 27793453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 17 - 117
Target Start/End: Original strand, 2626371 - 2626472
Alignment:
Q  17 caaaggtcacaactattttaatagtttatggtgttttccaacaaagataaacttgagaaaac-aataataaattcactacaacatctaatgttttggaat 115  Q
    |||||||||||| || ||||||||||||| |||||||||||||| | ||||||||||||||| |||||||||||||||| |||||| || ||||||||||    
T  2626371 caaaggtcacaattactttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaaataataaattcactaaaacatcaaaagttttggaat 2626470  T
Q  116 at 117  Q
    ||    
T  2626471 at 2626472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 34 - 151
Target Start/End: Original strand, 32183630 - 32183749
Alignment:
Q  34 ttaatagtttatggtgt--tttccaacaaagataaacttgagaaaacaataataaattcactacaacatctaatgttttggaatatagttgaatttctaa 131  Q
    |||||||||||||||||  |||||||||| | |||||||| ||||| |||| |||||  |||| |||||| ||| |||||||||||||||||| ||||||    
T  32183630 ttaatagtttatggtgtgttttccaacaagggtaaacttgggaaaaaaatattaaatatactaaaacatcaaatattttggaatatagttgaagttctaa 32183729  T
Q  132 atcatcaaaagaaaagaaat 151  Q
    | ||||||||||||| ||||    
T  32183730 aacatcaaaagaaaaaaaat 32183749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 47 - 124
Target Start/End: Original strand, 3203414 - 3203490
Alignment:
Q  47 gtgttttccaacaaagataaacttgagaaaacaataataaattcactacaacatctaatgttttggaatatagttgaa 124  Q
    ||||||| ||||||||||||||||||||||| |||| |||||  |||| |||||| ||| ||||  ||||||||||||    
T  3203414 gtgtttttcaacaaagataaacttgagaaaa-aatattaaatatactaaaacatcaaatattttaaaatatagttgaa 3203490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 96 - 151
Target Start/End: Original strand, 25978971 - 25979026
Alignment:
Q  96 aacatctaatgttttggaatatagttgaatttctaaatcatcaaaagaaaagaaat 151  Q
    |||||| ||||||||| |||| ||||||| | ||||| ||||||||||||||||||    
T  25978971 aacatcaaatgttttgaaataaagttgaagtcctaaaacatcaaaagaaaagaaat 25979026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 91; Significance: 3e-44; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 17 - 147
Target Start/End: Complemental strand, 15233899 - 15233769
Alignment:
Q  17 caaaggtcacaactattttaatagtttatggtgttttccaacaaagataaacttgagaaaacaataataaattcactacaacatctaatgttttggaata 116  Q
    ||||||||||||||| ||||||||||||| |||||||||||||| | |||||||||||||||||||| |||||||||| |||||| || |||||||||||    
T  15233899 caaaggtcacaactactttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataacaaattcactaaaacatcaaaagttttggaata 15233800  T
Q  117 tagttgaatttctaaatcatcaaaagaaaag 147  Q
    |||||||| ||||||| ||||||||||||||    
T  15233799 tagttgaagttctaaaacatcaaaagaaaag 15233769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 17 - 147
Target Start/End: Original strand, 43040982 - 43041112
Alignment:
Q  17 caaaggtcacaactattttaatagtttatggtgttttccaacaaagataaacttgagaaaacaataataaattcactacaacatctaatgttttggaata 116  Q
    ||||||||||||||| |||||||||||||||||||||||||||| | |||| |||||||||||||||||||||||||| |||||| || |||||||||||    
T  43040982 caaaggtcacaactactttaatagtttatggtgttttccaacaagggtaaaattgagaaaacaataataaattcactaaaacatcaaaagttttggaata 43041081  T
Q  117 tagttgaatttctaaatcatcaaaagaaaag 147  Q
    |||||||| || |||| ||||||||||||||    
T  43041082 tagttgaagttttaaaacatcaaaagaaaag 43041112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 17 - 151
Target Start/End: Complemental strand, 41643038 - 41642901
Alignment:
Q  17 caaaggtcacaactattttaatagtttatggtgttttccaacaaagataaacttgagaaaacaataataaattcactacaacatctaatgttttggaa-- 114  Q
    ||||||||||||||| ||||||||||||||||||||||||  |||| ||||||||||||||||||||||||||||||| |||||| || |||||||||      
T  41643038 caaaggtcacaactactttaatagtttatggtgttttccagaaaaggtaaacttgagaaaacaataataaattcactaaaacatcaaaagttttggaata 41642939  T
Q  115 tatagttgaatttct-aaatcatcaaaagaaaagaaat 151  Q
    |||||||||| |||| ||| ||||||||||||||||||    
T  41642938 tatagttgaaattctaaaaacatcaaaagaaaagaaat 41642901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 23 - 146
Target Start/End: Complemental strand, 31296221 - 31296098
Alignment:
Q  23 tcacaactattttaatagtttatggtgttttccaacaaagataaacttgagaaaacaataataaattcactacaacatctaatgttttggaatatagttg 122  Q
    ||||||||| ||||||||||||| ||||||| |||||||| |||| |||||||||||||||||||||||||| |||||| || ||||| |||||||||||    
T  31296221 tcacaactactttaatagtttattgtgtttttcaacaaaggtaaatttgagaaaacaataataaattcactaaaacatcaaaagttttagaatatagttg 31296122  T
Q  123 aatttctaaatcatcaaaagaaaa 146  Q
    || ||||||| |||||||||||||    
T  31296121 aagttctaaaacatcaaaagaaaa 31296098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 17 - 147
Target Start/End: Complemental strand, 41252559 - 41252429
Alignment:
Q  17 caaaggtcacaactattttaatagtttatggtgttttccaacaaagataaacttgagaaaacaataataaattcactacaacatctaatgttttggaata 116  Q
    |||| |||||||||| ||||||||||||| || ||||||||||| |||||||||||||| |||||||||||||||||| |||||| || |||||||||||    
T  41252559 caaatgtcacaactactttaatagtttattgtattttccaacaaggataaacttgagaacacaataataaattcactaaaacatcaaaagttttggaata 41252460  T
Q  117 tagttgaatttctaaatcatcaaaagaaaag 147  Q
    || ||||| ||||||| ||| ||||||||||    
T  41252459 tatttgaagttctaaaacataaaaagaaaag 41252429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 17 - 146
Target Start/End: Original strand, 35793040 - 35793168
Alignment:
Q  17 caaaggtcacaactattttaatagtttatggtgttttccaacaaagataaacttgagaaaacaataataaattcactacaacatctaatgttttggaata 116  Q
    |||| |||||||||| ||||||||||||| |||||||||||||| | ||||||||| ||||||||||||||||| ||| |||||| || |||||||||||    
T  35793040 caaatgtcacaactactttaatagtttattgtgttttccaacaagggtaaacttga-aaaacaataataaattctctaaaacatcaaaagttttggaata 35793138  T
Q  117 tagttgaatttctaaatcatcaaaagaaaa 146  Q
    |||||||| ||||||| |||||||||||||    
T  35793139 tagttgaagttctaaaacatcaaaagaaaa 35793168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 18 - 147
Target Start/End: Original strand, 44104683 - 44104819
Alignment:
Q  18 aaaggtcacaactattttaatagtttatggtgttttccaacaaa-------gataaacttgagaaaacaataataaattcactacaacatctaatgtttt 110  Q
    ||||||||||||||  |||||||||||| ||||||||||||||        | |||||||||||||| |||||||||||||||| |||||| || |||||    
T  44104683 aaaggtcacaactaccttaatagtttattgtgttttccaacaatttataagggtaaacttgagaaaataataataaattcactaaaacatcaaaagtttt 44104782  T
Q  111 ggaatatagttgaatttctaaatcatcaaaagaaaag 147  Q
    | |||||||||||| ||||||| ||||||||||||||    
T  44104783 gaaatatagttgaagttctaaaacatcaaaagaaaag 44104819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 17 - 146
Target Start/End: Original strand, 31903513 - 31903641
Alignment:
Q  17 caaaggtcacaactattttaatagtttatggtgttttccaacaaagataaacttgagaaaacaataataaattcactacaacatctaatgttttggaata 116  Q
    ||||||||||||||| ||||||||||||||||||||||||| || | ||||| ||| |||||||||||||||| |||| |||||| ||   |||||||||    
T  31903513 caaaggtcacaactactttaatagtttatggtgttttccaataagggtaaac-tgataaaacaataataaatttactaaaacatcaaaaaatttggaata 31903611  T
Q  117 tagttgaatttctaaatcatcaaaagaaaa 146  Q
    || ||||| ||||||| |||||||| ||||    
T  31903612 tatttgaagttctaaaacatcaaaaaaaaa 31903641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 96 - 166
Target Start/End: Complemental strand, 21727734 - 21727667
Alignment:
Q  96 aacatctaatgttttggaatatagttgaatttctaaatcatcaaaagaaaagaaattaaatggagggagta 166  Q
    |||||| ||| ||||| |||||||||||| ||||||| ||||||||||||| ||   ||||||||||||||    
T  21727734 aacatcaaatattttgaaatatagttgaagttctaaaacatcaaaagaaaaaaa---aaatggagggagta 21727667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 91; Significance: 3e-44; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 17 - 147
Target Start/End: Complemental strand, 9831647 - 9831517
Alignment:
Q  17 caaaggtcacaactattttaatagtttatggtgttttccaacaaagataaacttgagaaaacaataataaattcactacaacatctaatgttttggaata 116  Q
    ||||||||||||||||||||||||||||| |||||||||||||| | |||||||||||||| ||||| |||||||||| |||||| || |||||||||||    
T  9831647 caaaggtcacaactattttaatagtttattgtgttttccaacaagggtaaacttgagaaaataataacaaattcactaaaacatcaaaagttttggaata 9831548  T
Q  117 tagttgaatttctaaatcatcaaaagaaaag 147  Q
    |||||||| ||||||| ||||||||||||||    
T  9831547 tagttgaaattctaaaacatcaaaagaaaag 9831517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 18 - 147
Target Start/End: Complemental strand, 46220402 - 46220273
Alignment:
Q  18 aaaggtcacaactattttaatagtttatggtgttttccaacaaagataaacttgagaaaacaataataaattcactacaacatctaatgttttggaatat 117  Q
    |||||||||||||| ||||||||||||| |||||||||||||| | |||||||||||||||||||| |||||||||| |||||| || ||||||||||||    
T  46220402 aaaggtcacaactactttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataacaaattcactaaaacatcaaaagttttggaatat 46220303  T
Q  118 agttgaatttctaaatcatcaaaagaaaag 147  Q
    ||||||| ||||||| ||||||||||||||    
T  46220302 agttgaagttctaaaacatcaaaagaaaag 46220273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 17 - 147
Target Start/End: Original strand, 10737834 - 10737964
Alignment:
Q  17 caaaggtcacaactattttaatagtttatggtgttttccaacaaagataaacttgagaaaacaataataaattcactacaacatctaatgttttggaata 116  Q
    ||||||||||||||| ||||||||||||| |||||||||||||| | ||||||||||||||||||||||||||||||| |||||| || ||||| |||||    
T  10737834 caaaggtcacaactactttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaattcactaaaacatcaaaagttttagaata 10737933  T
Q  117 tagttgaatttctaaatcatcaaaagaaaag 147  Q
    |||||||| ||||||| ||| ||||||||||    
T  10737934 tagttgaagttctaaaacattaaaagaaaag 10737964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 17 - 147
Target Start/End: Complemental strand, 47669263 - 47669133
Alignment:
Q  17 caaaggtcacaactattttaatagtttatggtgttttccaacaaagataaacttgagaaaacaataataaattcactacaacatctaatgttttggaata 116  Q
    ||||||||||||||| ||||||||||||| |||||||||||||| | |||||||||||||||||||| |||||||||| |||||| ||  ||||||||||    
T  47669263 caaaggtcacaactactttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataacaaattcactaaaacatcaaaaattttggaata 47669164  T
Q  117 tagttgaatttctaaatcatcaaaagaaaag 147  Q
    |||||||| ||||||| ||||||||||||||    
T  47669163 tagttgaagttctaaaacatcaaaagaaaag 47669133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 23 - 147
Target Start/End: Complemental strand, 4817407 - 4817283
Alignment:
Q  23 tcacaactattttaatagtttatggtgttttccaacaaagataaacttgagaaaacaataataaattcactacaacatctaatgttttggaatatagttg 122  Q
    |||||||||  |||||||||||| |||||||||||||| | |||||||||||||||||| |||||||||||| |||||| || |||||||||||||||||    
T  4817407 tcacaactaccttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaatgataaattcactaaaacatcaaaagttttggaatatagttg 4817308  T
Q  123 aatttctaaatcatcaaaagaaaag 147  Q
    || ||||||| ||||||||||||||    
T  4817307 aagttctaaaacatcaaaagaaaag 4817283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 22 - 146
Target Start/End: Complemental strand, 8889581 - 8889457
Alignment:
Q  22 gtcacaactattttaatagtttatggtgttttccaacaaagataaacttgagaaaacaataataaattcactacaacatctaatgttttggaatatagtt 121  Q
    |||||||||| ||||||||||||| ||||||| |||||| | ||||||||||||||||||||||||||||||| |||||| || ||||||||||||||||    
T  8889581 gtcacaactactttaatagtttattgtgtttttcaacaagggtaaacttgagaaaacaataataaattcactaaaacatcaaaagttttggaatatagtt 8889482  T
Q  122 gaatttctaaatcatcaaaagaaaa 146  Q
    ||| ||||||| ||| |||| ||||    
T  8889481 gaagttctaaaacataaaaaaaaaa 8889457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 17 - 146
Target Start/End: Original strand, 3384728 - 3384855
Alignment:
Q  17 caaaggtcacaactattttaatagtttatggtgttttccaacaaagataaacttgagaaaacaataataaattcactacaacatctaatgttttggaata 116  Q
    ||||||||||||||| ||||||||||||| |||||||||||||| | ||||||||||||||||||||||||||||||| |||||| || ||||||  | |    
T  3384728 caaaggtcacaactactttaatagtttattgtgttttccaacaagggtaaacttgagaaaacaataataaattcactaaaacatcaaaagttttg--aaa 3384825  T
Q  117 tagttgaatttctaaatcatcaaaagaaaa 146  Q
    |||||||  ||||||| |||||||||||||    
T  3384826 tagttgaggttctaaaacatcaaaagaaaa 3384855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 17 - 147
Target Start/End: Complemental strand, 18126994 - 18126865
Alignment:
Q  17 caaaggtcacaactattttaatagtttatggtgttttccaacaaagataaacttgagaaaacaataataaattcactacaacatctaatgttttggaata 116  Q
    |||| |||||||||| || |||||||| | |||||||||||||| | ||||||||||||||||||||||||||||||| |||||| || ||||| |||||    
T  18126994 caaaagtcacaactactt-aatagtttgttgtgttttccaacaagggtaaacttgagaaaacaataataaattcactaaaacatcaaaagttttagaata 18126896  T
Q  117 tagttgaatttctaaatcatcaaaagaaaag 147  Q
    |||||||| ||||||| ||||||||||||||    
T  18126895 tagttgaagttctaaaacatcaaaagaaaag 18126865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 17 - 140
Target Start/End: Complemental strand, 48564961 - 48564838
Alignment:
Q  17 caaaggtcacaactattttaatagtttatggtgttttccaacaaagataaacttgagaaaacaataataaattcactacaacatctaatgttttggaata 116  Q
    |||| |||||||||| ||||||||||||| |||||||||| ||| | ||||||||||||||||||||||||||||||| |||||| ||  ||||||||||    
T  48564961 caaaagtcacaactactttaatagtttattgtgttttccatcaagggtaaacttgagaaaacaataataaattcactaaaacatcaaaatttttggaata 48564862  T
Q  117 tagttgaatttctaaatcatcaaa 140  Q
    |||||||| || |||| |||||||    
T  48564861 tagttgaagttttaaaacatcaaa 48564838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 25 - 147
Target Start/End: Complemental strand, 4055620 - 4055498
Alignment:
Q  25 acaactattttaatagtttatggtgttttccaacaaagataaacttgagaaaacaataataaattcactacaacatctaatgttttggaatatagttgaa 124  Q
    ||||||| ||||| |||  || ||||||||||| || | ||||||||||||||||||||| ||||||||| |||||| || |||||||||||||||||||    
T  4055620 acaactactttaacagtgaattgtgttttccaataagggtaaacttgagaaaacaataattaattcactaaaacatcaaaagttttggaatatagttgaa 4055521  T
Q  125 tttctaaatcatcaaaagaaaag 147  Q
     ||||||| ||||||||||||||    
T  4055520 gttctaaaacatcaaaagaaaag 4055498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 17 - 146
Target Start/End: Complemental strand, 7414351 - 7414222
Alignment:
Q  17 caaaggtcacaactattttaatagtttatggtgttttccaacaaagataaacttgagaaaacaataataaattcactacaacatctaatgttttggaata 116  Q
    |||| |||||||||| ||||||||||||| ||||||| |||||| | ||||||||||||||||||||||||||||||| |||||| ||   |||  ||||    
T  7414351 caaatgtcacaactactttaatagtttattgtgtttttcaacaagggtaaacttgagaaaacaataataaattcactaaaacatcaaaaaatttaaaata 7414252  T
Q  117 tagttgaatttctaaatcatcaaaagaaaa 146  Q
    |||||||| ||||||| |||||||| ||||    
T  7414251 tagttgaagttctaaaacatcaaaaaaaaa 7414222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 64 - 146
Target Start/End: Original strand, 1236210 - 1236292
Alignment:
Q  64 taaacttgagaaaacaataataaattcactacaacatctaatgttttggaatatagttgaatttctaaatcatcaaaagaaaa 146  Q
    ||||||||||||||||||||||||||||||| | |||| || |||||||||||||||| || ||||||| |||||||||||||    
T  1236210 taaacttgagaaaacaataataaattcactaaaccatcaaaagttttggaatatagttaaagttctaaaacatcaaaagaaaa 1236292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 17 - 126
Target Start/End: Complemental strand, 39241296 - 39241186
Alignment:
Q  17 caaaggtcacaactattttaatagtttatggtgttttccaacaa-agataaacttgagaaaacaataataaattcactacaacatctaatgttttggaat 115  Q
    |||| |||||||||| ||||||||||||||||||||| |||||| ||  |||||||| | ||||||||||||||||||  |||| | || |||||| |||    
T  39241296 caaaagtcacaactactttaatagtttatggtgtttttcaacaagagtaaaacttgatacaacaataataaattcactgaaacaacaaaagttttgaaat 39241197  T
Q  116 atagttgaatt 126  Q
    |||||||||||    
T  39241196 atagttgaatt 39241186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 82 - 147
Target Start/End: Original strand, 1749521 - 1749586
Alignment:
Q  82 aataaattcactacaacatctaatgttttggaatatagttgaatttctaaatcatcaaaagaaaag 147  Q
    ||||||||||||| |||||| || ||||||| ||||| || || ||||||| ||||||||||||||    
T  1749521 aataaattcactaaaacatcaaaagttttggtatataattaaagttctaaaacatcaaaagaaaag 1749586  T

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Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 138
Target Start/End: Complemental strand, 26842551 - 26842462
Alignment:
Q  47 gtgttttccaacaaagataaacttgagaaaacaataataaattcactacaacatctaatgttttggaatatagttgaatttctaaatcatca 138  Q
    ||||||| |||||| ||||||||||| ||||  ||| |||||  |||| |||||| ||| ||||| |||||||||||| ||||||| |||||    
T  26842551 gtgtttttcaacaaggataaacttgaaaaaa--atattaaatatactaaaacatcaaatattttgaaatatagttgaagttctaaaacatca 26842462  T

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Target: chr4 (Bit Score: 86; Significance: 3e-41; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 17 - 146
Target Start/End: Complemental strand, 45590886 - 45590757
Alignment:
Q  17 caaaggtcacaactattttaatagtttatggtgttttccaacaaagataaacttgagaaaacaataataaattcactacaacatctaatgttttggaata 116  Q
    ||||||||||||||| ||||||||||||| |||||||||||||||| ||||||||| ||||||||||| ||||||||| |||||| || ||||| |||||    
T  45590886 caaaggtcacaactactttaatagtttattgtgttttccaacaaaggtaaacttgataaaacaataatgaattcactaaaacatcaaaagttttagaata 45590787  T
Q  117 tagttgaatttctaaatcatcaaaagaaaa 146  Q
    |||||||| ||||||| |||||||||||||    
T  45590786 tagttgaagttctaaaacatcaaaagaaaa 45590757  T

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Target: chr4; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 17 - 147
Target Start/End: Complemental strand, 34334476 - 34334346
Alignment:
Q  17 caaaggtcacaactattttaatagtttatggtgttttccaacaaagataaacttgagaaaacaataataaattcactacaacatctaatgttttggaata 116  Q
    ||||| ||||||||| ||||||||||||| ||||||| |||||| | |||||||||||| |||||||||||||||||| | |||| || |||||||||||    
T  34334476 caaagatcacaactactttaatagtttattgtgtttttcaacaagggtaaacttgagaagacaataataaattcactaaagcatcaaaagttttggaata 34334377  T
Q  117 tagttgaatttctaaatcatcaaaagaaaag 147  Q
    |||||||| ||||||| ||||||||||||||    
T  34334376 tagttgaagttctaaaacatcaaaagaaaag 34334346  T

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Target: chr4; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 17 - 146
Target Start/End: Complemental strand, 49162245 - 49162117
Alignment:
Q  17 caaaggtcacaactattttaatagtttatggtgttttccaacaaagataaacttgagaaaacaataataaattcactacaacatctaatgttttggaata 116  Q
    ||||||| ||||||| |||||||||||||||||||||||||||| | |||| |||||||||||||||||||||||||| |||||| ||  ||||||||||    
T  49162245 caaaggttacaactactttaatagtttatggtgttttccaacaagg-taaaattgagaaaacaataataaattcactaaaacatcaaaaattttggaata 49162147  T
Q  117 tagttgaatttctaaatcatcaaaagaaaa 146  Q
    |||||||| |||| || |||||||||||||    
T  49162146 tagttgaagttctgaaacatcaaaagaaaa 49162117  T

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Target: chr4; HSP #4
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 17 - 151
Target Start/End: Complemental strand, 18835851 - 18835715
Alignment:
Q  17 caaaggtcacaactattttaatagtttatggtgttttccaacaaagataaacttgagaaaacaata--ataaattcactacaacatctaatgttttggaa 114  Q
    |||| |||||||||| |||||||||||||| ||||||| ||||| |||||| ||||||||||||||  ||| |||||||| |||||| || |||||||||    
T  18835851 caaatgtcacaactactttaatagtttatgatgttttctaacaaggataaatttgagaaaacaataatatatattcactaaaacatcgaaagttttggaa 18835752  T
Q  115 tatagttgaatttctaaatcatcaaaagaaaagaaat 151  Q
    |||||||||| ||||||| ||||||||||||| ||||    
T  18835751 tatagttgaagttctaaaacatcaaaagaaaataaat 18835715  T

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Target: chr4; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 17 - 147
Target Start/End: Original strand, 8955909 - 8956039
Alignment:
Q  17 caaaggtcacaactattttaatagtttatggtgttttccaacaaagataaacttgagaaaacaataataaattcactacaacatctaatgttttggaata 116  Q
    ||||||||||||||| ||||||| ||||| ||||||||||| || | ||||||||| |||||||||| |||||||||| |||||| || |||||| ||||    
T  8955909 caaaggtcacaactactttaataatttattgtgttttccaataagggtaaacttgataaaacaataacaaattcactaaaacatcaaaagttttgtaata 8956008  T
Q  117 tagttgaatttctaaatcatcaaaagaaaag 147  Q
    |||||||| ||||||| |||||||| |||||    
T  8956009 tagttgaagttctaaaacatcaaaaaaaaag 8956039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 17 - 151
Target Start/End: Original strand, 33288538 - 33288672
Alignment:
Q  17 caaaggtcacaactattttaatagtttatggtgttttccaacaaagataaacttgagaaaacaataataaattcactacaacatctaatgttttggaata 116  Q
    |||| |||||||||| ||||  ||| ||| |||||||||||||  | ||||||||||||||||||||||||||||||| |||||| || |||||||||||    
T  33288538 caaatgtcacaactactttatcagtatattgtgttttccaacatgggtaaacttgagaaaacaataataaattcactaaaacatcaaaagttttggaata 33288637  T
Q  117 tagttgaatttctaaatcatcaaaagaaaagaaat 151  Q
    || ||||| |||||||  |||||||||||||||||    
T  33288638 taattgaagttctaaaatatcaaaagaaaagaaat 33288672  T

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Target: chr4; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 69 - 147
Target Start/End: Original strand, 30469353 - 30469431
Alignment:
Q  69 ttgagaaaacaataataaattcactacaacatctaatgttttggaatatagttgaatttctaaatcatcaaaagaaaag 147  Q
    |||||||||||||||||||||||||| |||||| || ||||||||||||||||||| ||||||| ||||||||||||||    
T  30469353 ttgagaaaacaataataaattcactaaaacatcaaaagttttggaatatagttgaagttctaaaacatcaaaagaaaag 30469431  T

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Target: chr4; HSP #8
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 17 - 94
Target Start/End: Complemental strand, 36971192 - 36971116
Alignment:
Q  17 caaaggtcacaactattttaatagtttatggtgttttccaacaaagataaacttgagaaaacaataataaattcacta 94  Q
    ||||||||||||||||||||||||||||| |||||||||||| ||| ||||||| |||||||||||||||||||||||    
T  36971192 caaaggtcacaactattttaatagtttattgtgttttccaac-aaggtaaacttcagaaaacaataataaattcacta 36971116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 58 - 151
Target Start/End: Complemental strand, 39482006 - 39481913
Alignment:
Q  58 caaagataaacttgagaaaacaataataaattcactacaacatctaatgttttggaatatagttgaatttctaaatcatcaaaagaaaagaaat 151  Q
    ||||| ||||| |||||||||||||||||||| |||| |||||| || ||||||||| ||||||||| ||||||| ||||||||||||||||||    
T  39482006 caaaggtaaacctgagaaaacaataataaatttactaaaacatcaaaagttttggaaaatagttgaagttctaaaacatcaaaagaaaagaaat 39481913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 17 - 167
Target Start/End: Original strand, 50774191 - 50774345
Alignment:
Q  17 caaaggtcacaactattttaatagtttatggtgttttccaacaaagataaacttgagaaaacaataataaattcactacaa-----catctaatgttttg 111  Q
    |||| ||||| |||| ||||||||||||| ||||||||||||||   ||||||||||||||||||||||||||||||| ||      ||| || ||||||    
T  50774191 caaaagtcacgactaatttaatagtttattgtgttttccaacaagagtaaacttgagaaaacaataataaattcactaaaatactgtatcaaaagttttg 50774290  T
Q  112 gaatatagttgaatttctaaatcatcaaaagaaaagaaattaaatggagggagtac 167  Q
     ||||||||| || ||||||| |||||||| |||| ||||| ||||||| ||||||    
T  50774291 aaatatagttaaagttctaaaacatcaaaaaaaaaaaaatt-aatggagagagtac 50774345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 146
Target Start/End: Original strand, 33109031 - 33109163
Alignment:
Q  17 caaaggtcacaactattttaatagttt-atggtgt--tttccaacaaagataaacttgagaaaacaataataaattcactacaacatctaatgttttgga 113  Q
    ||||||||||||||  ||||||||||| |||||||  |||  ||||| ||||||||| |||||| |||| |||||  |||| |||||| | | ||||  |    
T  33109031 caaaggtcacaactcatttaatagttttatggtgtgttttttaacaaggataaacttaagaaaaaaatattaaatatactaaaacatcaattattttaaa 33109130  T
Q  114 atatagttgaatttctaaatcatcaaaagaaaa 146  Q
    ||||||||||| | ||||| ||| |||||||||    
T  33109131 atatagttgaagtcctaaaacattaaaagaaaa 33109163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 47 - 146
Target Start/End: Original strand, 26025686 - 26025784
Alignment:
Q  47 gtgttttccaacaaagataaacttgagaaaacaataataaattcactacaacatctaatgttttggaatatagttgaatttctaaatcatcaaaagaaaa 146  Q
    ||||||| |||||| | |||||||| ||||| |||| |||||  |||| ||  || ||| |||||||||||||||||| | ||||| |||||||||||||    
T  26025686 gtgtttttcaacaagggtaaacttgggaaaa-aatattaaatatactaaaatgtcaaatattttggaatatagttgaagtcctaaaacatcaaaagaaaa 26025784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 146
Target Start/End: Complemental strand, 36968403 - 36968353
Alignment:
Q  96 aacatctaatgttttggaatatagttgaatttctaaatcatcaaaagaaaa 146  Q
    |||||| || ||||||||||||||||||| ||||||| |||||||| ||||    
T  36968403 aacatcaaaagttttggaatatagttgaagttctaaaacatcaaaaaaaaa 36968353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 147
Target Start/End: Complemental strand, 36016329 - 36016293
Alignment:
Q  111 ggaatatagttgaatttctaaatcatcaaaagaaaag 147  Q
    |||||||||||||| ||||||| ||||||||||||||    
T  36016329 ggaatatagttgaagttctaaaacatcaaaagaaaag 36016293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 17 - 147
Target Start/End: Complemental strand, 44764 - 44633
Alignment:
Q  17 caaaggtcacaactattttaatagtttatggtgttttccaacaaagataaacttgagaaaacaataataaattcactacaacatctaatgttttggaata 116  Q
    ||||||||||||||| ||||||||||||| ||||||| |||||| | ||||||||||||||||||||||||||||||| ||| || || |||||||||||    
T  44764 caaaggtcacaactactttaatagtttattgtgtttttcaacaagggtaaacttgagaaaacaataataaattcactaaaacctcaaaagttttggaata 44665  T
Q  117 tagttgaatttctaaatcatca-aaagaaaag 147  Q
    |||||||| |||| || ||||| |||||||||    
T  44664 tagttgaagttctcaaacatcagaaagaaaag 44633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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