View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10142_low_75 (Length: 217)

Name: NF10142_low_75
Description: NF10142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10142_low_75
NF10142_low_75
[»] chr3 (5 HSPs)
chr3 (10-209)||(47419319-47419518)
chr3 (10-209)||(47390956-47391155)
chr3 (10-209)||(47421775-47421990)
chr3 (10-116)||(47408183-47408289)
chr3 (10-123)||(47424609-47424722)


Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-107; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 10 - 209
Target Start/End: Complemental strand, 47419518 - 47419319
Alignment:
Q  10 agagagatgaaatacccaaagaacattttgtacggcttatgaaagggattgtgggggatcagatgcttaggatagcattagcaaaagtgcaacaacaggt 109  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47419518 agagagatgaaatgcccaaagaacattttgtacggcttatgaaagggattgtgggggatcagatgcttaggatagcattagcaaaagtgcaacaacaggt 47419419  T
Q  110 aggtagaatagatgttttttcttaaggtggttagagataggtttcaacgttatgctaagaaccgtcctttttcttgtagacaaaaaccaacacaggttct 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47419418 aggtagaatagatgttttttcttaaggtggttagagataggtttcaacgttatgctaagaaccgtcctttttcttgtagacaaaaaccaacacaggttct 47419319  T

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Target: chr3; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 10 - 209
Target Start/End: Complemental strand, 47391155 - 47390956
Alignment:
Q  10 agagagatgaaatacccaaagaacattttgtacggcttatgaaagggattgtgggggatcagatgcttaggatagcattagcaaaagtgcaacaacaggt 109  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  47391155 agagagatgaaatacctaaagaacattttgtacggcttatgaaagggattgtgggggatcagatgcttaggatagcattaacaaaagtgcaacaacaggt 47391056  T
Q  110 aggtagaatagatgttttttcttaaggtggttagagataggtttcaacgttatgctaagaaccgtcctttttcttgtagacaaaaaccaacacaggttct 209  Q
    ||| |||||||||| |||||| |||||||||||||||||| |||||||||||||||||||||| |||||||| ||| ||||||||||||| |||||||||    
T  47391055 aggcagaatagatgatttttcctaaggtggttagagatagatttcaacgttatgctaagaaccatcctttttattgcagacaaaaaccaatacaggttct 47390956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 10 - 209
Target Start/End: Complemental strand, 47421990 - 47421775
Alignment:
Q  10 agagagatgaaatacccaaagaacattttgtacggcttatgaaagggattgtgggggatcagatgcttaggatagcattagcaaaagtgcaacaacaggt 109  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  47421990 agagagatgaaataccgaaagaacattttgtacggcttatgaaagggattgtgggggatccgatgcttaggatagcattagcaaaagtgcaacaacaggt 47421891  T
Q  110 aggtagaatag--------------------atgttttttcttaaggtggttagagataggtttcaacgttatgctaagaaccgtcctttttcttgtaga 189  Q
    |||||||||||                    |||| ||||||||||||||||| |||||| |||||||||||||||||||||| |||||||||||    |    
T  47421890 aggtagaatagatagtttactttatcttacaatgtgttttcttaaggtggttaaagatagatttcaacgttatgctaagaaccatcctttttctt----a 47421795  T
Q  190 caaaaaccaacacaggttct 209  Q
    |||||||||| |||||||||    
T  47421794 caaaaaccaatacaggttct 47421775  T

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Target: chr3; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 10 - 116
Target Start/End: Complemental strand, 47408289 - 47408183
Alignment:
Q  10 agagagatgaaatacccaaagaacattttgtacggcttatgaaagggattgtgggggatcagatgcttaggatagcattagcaaaagtgcaacaacaggt 109  Q
    |||||||||||||| ||||||| || | |||| ||||| ||||||||||||||| |||||||||| |||||| ||||||| || ||||||| ||||||||    
T  47408289 agagagatgaaatatccaaagatcagtgtgtaaggcttttgaaagggattgtggaggatcagatgattaggaaagcattaacagaagtgcagcaacaggt 47408190  T
Q  110 aggtaga 116  Q
    |||||||    
T  47408189 aggtaga 47408183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 10 - 123
Target Start/End: Complemental strand, 47424722 - 47424609
Alignment:
Q  10 agagagatgaaatacccaaagaacattttgtacggcttatgaaagggattgtgggggatcagatgcttaggatagcattagcaaaagtgcaacaacaggt 109  Q
    ||||||||||| |  ||||| | || |||||||||||||||||||| ||||||||| | ||||||||||    | ||||| || ||||||| ||||||||    
T  47424722 agagagatgaagtgtccaaacatcaatttgtacggcttatgaaaggcattgtggggaagcagatgcttatatcaacattaacagaagtgcaccaacaggt 47424623  T
Q  110 aggtagaatagatg 123  Q
    | ||||| ||||||    
T  47424622 acgtagattagatg 47424609  T

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