View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10142_low_77 (Length: 205)
Name: NF10142_low_77
Description: NF10142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10142_low_77 |
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Alignment Details
Target: chr3 (Bit Score: 138; Significance: 2e-72; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 138; E-Value: 2e-72
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 53004840 - 53004692
Alignment:
| Q |
1 |
aaggaaaacaaaccaaggtaagtagtacctttgtatggcacccaaacctctgctacccataatcaaagcatcaagcttcaaatccccaacataatcaaca |
100 |
Q |
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| T |
53004840 |
aaggaaaacaaaccaaggta-gtagtacctttgtatgacacccaaacctctgctacccataatcaaagcatcaagcttcaaatccccaacataatcaaca |
53004742 |
T |
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| Q |
101 |
atcttccctcttgcatcaccccaatataacttttgagtggaaaatatgta |
150 |
Q |
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| T |
53004741 |
atcttccctcttgcatcaccccaatataacttttgagtggaaaatatgta |
53004692 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 13604857 - 13604731
Alignment:
| Q |
1 |
aaggaaaacaaaccaaggtaagtagtacctttgtatggcacccaaacctctgctacccataatcaaagcatcaagcttcaaatccccaacataatcaaca |
100 |
Q |
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|||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| ||||||||||||||| |
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| T |
13604857 |
aaggaaaacaaaccaacgta-gtagtacctttgtatggcacccaaacctctggtacccataaccaaagcatcaagcttcaaatctccaacataatcaaca |
13604759 |
T |
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| Q |
101 |
atcttccctcttgcatcaccccaatata |
128 |
Q |
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| T |
13604758 |
atcttctctcttgcatcaccccaatata |
13604731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 20 - 128
Target Start/End: Original strand, 24269599 - 24269707
Alignment:
| Q |
20 |
aagtagtacctttgtatggcacccaaacctctgctacccataatcaaagcatcaagcttcaaatccccaacataatcaacaatcttccctcttgcatcac |
119 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| ||| |||||||||| | |
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| T |
24269599 |
aagtagtacctttgtatagcacccaaacctctgctacccataaccaaagcatcaagcttcaaatccccaacagaatcaacaattttctctcttgcatctc |
24269698 |
T |
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| Q |
120 |
cccaatata |
128 |
Q |
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|||| |||| |
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| T |
24269699 |
cccagtata |
24269707 |
T |
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