View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10142_low_78 (Length: 205)
Name: NF10142_low_78
Description: NF10142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10142_low_78 |
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Alignment Details
Target: chr7 (Bit Score: 166; Significance: 5e-89; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 17 - 190
Target Start/End: Complemental strand, 35741610 - 35741437
Alignment:
| Q |
17 |
cagaggagttagaatgcagtagtgattgccttaataatctgcggatggtgaatatccatgttagagcatatagaatttctcagcatgcaatgagtttgat |
116 |
Q |
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| T |
35741610 |
cagaggagttagaatgcagtagtgactgccttaataatctgcggatggtgaatatccatgttagagcatatagaatttctcagcatgcaatgagtttgat |
35741511 |
T |
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| Q |
117 |
acgtttcatacttgcaaattctacatcgttaaggacacttacttttatagtttgtcctggttcaaagagtttag |
190 |
Q |
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| T |
35741510 |
acgtttcatacttgcaaattctacatcgttaaggactcttacttttatagtttgtcctggttcaaagagtttag |
35741437 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 17 - 168
Target Start/End: Complemental strand, 35748016 - 35747871
Alignment:
| Q |
17 |
cagaggagttagaatgcagtagtgattgccttaataatctgcggatggtgaatatccatgttagagcatatagaatttctcagcatgcaatgagtttgat |
116 |
Q |
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| T |
35748016 |
cagaggagttagaatgcaatagttattgccttaataatctgcagattgtgaatatccatgttagagc---tgg---ttctcagcatgcaatgagtttgat |
35747923 |
T |
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| Q |
117 |
acgtttcatacttgcaaattctacatcgttaaggacacttacttttatagtt |
168 |
Q |
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| T |
35747922 |
acggttcatacttgcaaattctacatcattaaggactcttacttttaaagtt |
35747871 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 99 - 148
Target Start/End: Complemental strand, 35737340 - 35737291
Alignment:
| Q |
99 |
gcatgcaatgagtttgatacgtttcatacttgcaaattctacatcgttaa |
148 |
Q |
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| T |
35737340 |
gcatgcaatgagtttgagacggttcatacttgcaaattccacatcgttaa |
35737291 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 157
Target Start/End: Complemental strand, 35746106 - 35746054
Alignment:
| Q |
105 |
aatgagtttgatacgtttcatacttgcaaattctacatcgttaaggacactta |
157 |
Q |
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| T |
35746106 |
aatgagtttgatacggttcatacttgtaaattccacatcattaaagactctta |
35746054 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 101 - 168
Target Start/End: Original strand, 10863576 - 10863643
Alignment:
| Q |
101 |
atgcaatgagtttgatacgtttcatacttgcaaattctacatcgttaaggacacttacttttatagtt |
168 |
Q |
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| T |
10863576 |
atgcaatgagtttgatacggttcatacttgcaaattcctcgtcattaaagactcttacttttaaagtt |
10863643 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 100 - 148
Target Start/End: Original strand, 10904622 - 10904670
Alignment:
| Q |
100 |
catgcaatgagtttgatacgtttcatacttgcaaattctacatcgttaa |
148 |
Q |
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| T |
10904622 |
catgcaatgagtttgatacggttcatacttggaaattcctcatcgttaa |
10904670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 106 - 159
Target Start/End: Original strand, 16866589 - 16866642
Alignment:
| Q |
106 |
atgagtttgatacgtttcatacttgcaaattctacatcgttaaggacacttact |
159 |
Q |
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| T |
16866589 |
atgagtttgattcgtttcatacttgcaaattcctcatcgttgaagactcttact |
16866642 |
T |
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