View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10142_low_79 (Length: 201)
Name: NF10142_low_79
Description: NF10142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10142_low_79 |
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Alignment Details
Target: chr3 (Bit Score: 169; Significance: 8e-91; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 13 - 185
Target Start/End: Complemental strand, 7203772 - 7203600
Alignment:
| Q |
13 |
agatgaacaatgcaagggagagtctcatgatgactgaatcaattgcagcagcatccaagtccaacacagtaactaatccaaattaactgcagtaatatat |
112 |
Q |
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| T |
7203772 |
agatgaacaatgcaagggagagtctcatgatgactgaatcaattgcagcagcatccaagtccaacacagtaactaatccaaattaactgcagtaatagat |
7203673 |
T |
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| Q |
113 |
aaaagttgatttatagaaagatgtgacgaaactatagagtagaattaaaactttcttttatccaacatttttt |
185 |
Q |
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| T |
7203672 |
aaaagttgatttatagaaagatgtgacgaaactatagagtagaattaaaactttcttttatccaacatttttt |
7203600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 18 - 184
Target Start/End: Complemental strand, 7196477 - 7196304
Alignment:
| Q |
18 |
aacaatgcaagggagagtctcatgatgactgaatcaattgcagcagcatccaagtccaacacagta-------actaatccaaattaactgcagtaatat |
110 |
Q |
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| T |
7196477 |
aacaatgcaaggtagagtctcatgatgactgaatgaattgcagcagcatccaagtccaacacagtagtcagtaactaatccaaattaactgcagtaatag |
7196378 |
T |
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| Q |
111 |
ataaaagttgatttatagaaagatgtgacgaaactatagagtagaattaaaactttcttttatccaacattttt |
184 |
Q |
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| T |
7196377 |
ataaaagctgatttatagaaagatcttatgaaactatagagtagaattcaaactttcttttatccaacattttt |
7196304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 18 - 162
Target Start/End: Complemental strand, 7210137 - 7209993
Alignment:
| Q |
18 |
aacaatgcaagggagagtctcatgatgactgaatcaattgcagcagcatccaagtccaacacagtaactaatccaaattaactgcagtaatatataaaag |
117 |
Q |
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| T |
7210137 |
aacaatgcaaggtagagtctcatgatcactgaatcaattgcagcagcatccaagtccaacacagtaactaatccaaattaactgcagtaatagataaaag |
7210038 |
T |
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| Q |
118 |
ttgatttatagaaagatgtgacgaaactatagagtagaattaaaa |
162 |
Q |
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| T |
7210037 |
ctgatttatggaaagatcttatgaaactatagagtagaattaaaa |
7209993 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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