View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10142_low_8 (Length: 508)
Name: NF10142_low_8
Description: NF10142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10142_low_8 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 263; Significance: 1e-146; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 199 - 508
Target Start/End: Original strand, 31041145 - 31041456
Alignment:
| Q |
199 |
ccaatcccaaacactcta---acgtggtttgctagttgtaatgcattcgaatagtattatatgaatcgtctgattaagatctcattgtttagattttaat |
295 |
Q |
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| T |
31041145 |
ccaatcccaaacactctctctacctggtttgctagttgtaatgcattcgaatagtattatatgaatcgtctgattaagatcacattttttagattttaat |
31041244 |
T |
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| Q |
296 |
ggtgtcataccttgatttagtggtttgtcttattaagaataaatggttgagatcatgtgactgcattaatgcatgattatctcgaccttaaggaattcat |
395 |
Q |
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| T |
31041245 |
ggtgtcataccttgacttac-ggtttgtcttattaagaataaatggttgagatcatgtgactgcattaatgcatgattatctcgaccttaaggaattcat |
31041343 |
T |
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| Q |
396 |
ttctctccgactccaaaacacctatgcttatttcgccaatttcataaatctatctaaataacacactgttatacatcaattttctttatctacatcaaac |
495 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31041344 |
ttctctccgactccaaaacacctatgcttatttcgccaatttcataaatgtatctaaataacacactgttatacatcaattttctttatctacatcaaac |
31041443 |
T |
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| Q |
496 |
attttaatctcct |
508 |
Q |
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| T |
31041444 |
attttaatctcct |
31041456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 12 - 102
Target Start/End: Original strand, 31040958 - 31041048
Alignment:
| Q |
12 |
aaaggagtgaaaagtagttgaatcctcgtgtaagctttataaggcacctaaagtctcattaccatgcaagtgatgcccaagattttgttgg |
102 |
Q |
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| T |
31040958 |
aaaggagtgaaaagtagttgaatcctcgtgtaagctttataaggcacctaaagtctcattaccatgcaagtgatacccaagattttgttgg |
31041048 |
T |
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