View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10143_high_1 (Length: 291)
Name: NF10143_high_1
Description: NF10143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10143_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 248; Significance: 1e-138; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 2 - 282
Target Start/End: Complemental strand, 47063513 - 47063235
Alignment:
| Q |
2 |
caattatgaaatagtttactaacacaataaaacaaatacgaataccaaccgcaagtgccagaaaaatcatgaattaatccaaagcataggtctgatttta |
101 |
Q |
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| T |
47063513 |
caattatgaaatagtttactaacacaataaaacaaatacgaataccaaccgcaggtgccagaaaaatcatgaattaatccaaagcataggtctgatttta |
47063414 |
T |
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| Q |
102 |
tgtacgattgatcagaatgaaactgaaatgacaaaaataccaatacattagcatccaaatgtatattgcttgagaagattttctaataaaaaagcacaac |
201 |
Q |
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| T |
47063413 |
tgtacgattgatcagaatgaaactgaaatgacaaaaataccaatacattagcatccaaatgtatattgtttgagaagattttctaataaaaaagcac--- |
47063317 |
T |
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| Q |
202 |
aacactgtaacaattgatgaaaactaggggagacaagagtgggaggacaagagcgtgcgtttgtgattgtgat-gtccatct |
282 |
Q |
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| T |
47063316 |
aacactgtaacaattgatgaaaactaggggagacaagagtgggaggacaagagtgtgcgtttgtgattgtgatcgtccatct |
47063235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 47038783 - 47038714
Alignment:
| Q |
1 |
ccaattatgaaatagtttactaacacaataaaacaaatacgaataccaaccgcaagtgccagaaaaatca |
70 |
Q |
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||||||| |||||||| |||||||||||||||| |||| |||||| |||| | ||||| |||||||||| |
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| T |
47038783 |
ccaattactaaatagttaactaacacaataaaaccaataggaatacaaaccactagtgcaagaaaaatca |
47038714 |
T |
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