View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10143_low_1 (Length: 510)
Name: NF10143_low_1
Description: NF10143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10143_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 286; Significance: 1e-160; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 153 - 495
Target Start/End: Complemental strand, 44767665 - 44767323
Alignment:
| Q |
153 |
gtcaatctgaatgaaacgaacataacaataagatgagaaatcaaaactacgtaccaaaacgcgaacaacaacattgtatcacttaaacgacgaaatcaca |
252 |
Q |
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| T |
44767665 |
gtcaatctgaatgaaacgaacataacaataagatgagaaatcaaaactacacaccaaaacgcgaacaacaacattttatcactcaaacgacgaaatcaca |
44767566 |
T |
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| Q |
253 |
aacaaaacataatacaaaaacggaatgtatgtactaaaataccacttatttgaataggagaagnnnnnnntgatttagataagtgattttggaccaaact |
352 |
Q |
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| T |
44767565 |
aacaaaacataatacaaaaacggaatctatgtactaaaataccacttatttgaataggagaagaaaaaaatgatttagatgagtaattttggaccaaact |
44767466 |
T |
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| Q |
353 |
aatgattgaacatcaattattaaccactaaacgataactttttcccttgaataatttcatggaataatcttgtttccaatcttttcaatttgcatgttga |
452 |
Q |
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| T |
44767465 |
aatgattgaacatcaattattaaccactaaacgataactttttcccttgaataatttcatggaataatcttctttccaatcttttcaatttgcatgttga |
44767366 |
T |
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| Q |
453 |
tgttttgtttaaatgttgattgtactcttttaattgtttgttg |
495 |
Q |
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| T |
44767365 |
tgttttgtttaaatgttgattatactcttttaattgtttgttg |
44767323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 73 - 122
Target Start/End: Complemental strand, 44767790 - 44767741
Alignment:
| Q |
73 |
gtgacaaaatgcatacaaatgtgacaaaataaaggtgttcggaataccat |
122 |
Q |
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| T |
44767790 |
gtgacaaaatgtttacaaatgtgacaaaataaaggcattcggaataccat |
44767741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 455 - 495
Target Start/End: Original strand, 44110872 - 44110912
Alignment:
| Q |
455 |
ttttgtttaaatgttgattgtactcttttaattgtttgttg |
495 |
Q |
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| T |
44110872 |
ttttgtttaaatattgattgtattcttttaattgtttgttg |
44110912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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