View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10143_low_2 (Length: 482)
Name: NF10143_low_2
Description: NF10143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10143_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 346; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 17 - 469
Target Start/End: Original strand, 5822714 - 5823183
Alignment:
| Q |
17 |
aaatcaaagcagccctaatgttacatatactaaattatttgaacgt------------------tatcttttagtagagctcattacccacttgaactga |
98 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
5822714 |
aaatcaaagcagccctaatgttacatatactaaattatttgaacgtggattctccggaacgatttatcttttagtagagctcattacccacttgaactga |
5822813 |
T |
|
| Q |
99 |
atcacttagttattttcttatatcatgtattggtcttagggaagtaannnnnnnnn-attctcattgactttgacaaatgtatgtgatgatggtaaataa |
197 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5822814 |
atcacttagttattttcttatatcatgtattggtctt-gggaagtaaatttttttttattctcattgactttgacaaatgtatgtgatgatggtaaataa |
5822912 |
T |
|
| Q |
198 |
aatagtagcattaacaaacaattgttaccttctccagcagccaaattgaagaaaaggtcaacaatattgggacacttagagaaacaagatggagaacaaa |
297 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5822913 |
aatagt-gcattaacaaacaattgttaccttctccagcagccaaattaaagaaaaggtcaacaatattgggacacttagagaaacaagatggagaacaaa |
5823011 |
T |
|
| Q |
298 |
gcttgcttgtgaagtaaggctcaaagaaagcatcagatgaaataccaacagaacttctatcaacaccacatgcttccacacattggtctgtctctatgta |
397 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |
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| T |
5823012 |
gcttgcttgtgaagtaaggctcaaagaaagcatcagatgaaataccaacagaacttctatcaacaccacatgcttctacacattcgtctgtctctatgta |
5823111 |
T |
|
| Q |
398 |
tgctgctattctctccaccataacttcagatgttcgacattgatactcggtttcaccattgatattcttctc |
469 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
5823112 |
tgctgctattctctccaccataacttcagatgttcggcattgatactcggtttcaccattgatattcttctc |
5823183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 62 - 469
Target Start/End: Complemental strand, 5829102 - 5828694
Alignment:
| Q |
62 |
ttatcttttagtagagctcattacccacttgaactgaatcacttagttattttcttatatcatgtattggtcttagggaagtaannnnnnnnn---attc |
158 |
Q |
| |
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||||||| ||||| ||||||||||| ||||||||||||||| ||| |||||||||||||||||||||| ||||| ||||||||| |||| |
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| T |
5829102 |
ttatcttctagtatagctcattaccaacttgaactgaatcagttaattattttcttatatcatgtatttgtctt-gggaagtaaaatattttttttattc |
5829004 |
T |
|
| Q |
159 |
tcattgactttgacaaatgtatgtgatgatggtaaataaaatagtagcattaacaaacaattgttaccttctccagcagccaaattgaagaaaaggtcaa |
258 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | ||||||||||||||||||||||| ||||||||||||| |
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| T |
5829003 |
acattgactttgacaaatgtatgtgatgatggtaaataaaatagt-gcattaacaaacaagtcttaccttctccagcagccaaattaaagaaaaggtcaa |
5828905 |
T |
|
| Q |
259 |
caatattgggacacttagagaaacaagatggagaacaaagcttgcttgtgaagtaaggctcaaagaaagcatcagatgaaataccaacagaacttctatc |
358 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5828904 |
caatattgggacacttagagaaacaagatggagaacaaagcttgcttgtgaagtaaggctcaaagaaagcatcagatgaaataccaacagaacttctatc |
5828805 |
T |
|
| Q |
359 |
aacaccacatgcttccacacattggtctgtctctatgtatgctgctattctctccaccataacttcagatgttcgacattgatactcggtttcaccattg |
458 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
5828804 |
aacaccacatgcttccacacattgatctgtctctatgtatgctgctattctctccaccataacttcagatgttcggcattgatactcggtttcaccattg |
5828705 |
T |
|
| Q |
459 |
atattcttctc |
469 |
Q |
| |
|
||||||||||| |
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|
| T |
5828704 |
atattcttctc |
5828694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 222 - 459
Target Start/End: Original strand, 5832814 - 5833051
Alignment:
| Q |
222 |
ttaccttctccagcagccaaattgaagaaaaggtcaacaatattgggacacttagagaaacaagatggagaacaaagcttgcttgtgaagtaaggctcaa |
321 |
Q |
| |
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||||| ||||||||||||| ||||||||||||||||||||| || || ||||| | |||||| ||| || ||||| |||| ||||| | ||||||| |
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| T |
5832814 |
ttaccctctccagcagccatattgaagaaaaggtcaacaatgttagggcactttttgtaacaagctggtgagcaaagtttgccggtgaattgtggctcaa |
5832913 |
T |
|
| Q |
322 |
agaaagcatcagatgaaataccaacagaacttctatcaacaccacatgcttccacacattggtctgtctctatgtatgctgctattctctccaccataac |
421 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| ||||||||||| ||||| |
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| T |
5832914 |
agaaagcatcagatgaaataccaacagaacttctatcaacaccacatgcttccacacattgatctgtctctatgtactctgaaattctctccactataac |
5833013 |
T |
|
| Q |
422 |
ttcagatgttcgacattgatactcggtttcaccattga |
459 |
Q |
| |
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||||||||||| |||||||||||| |||||||||||| |
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| T |
5833014 |
ttcagatgttctacattgatactcaatttcaccattga |
5833051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 222 - 446
Target Start/End: Original strand, 24038434 - 24038658
Alignment:
| Q |
222 |
ttaccttctccagcagccaaattgaagaaaaggtcaacaatattgggacacttagagaaacaagatggagaacaaagcttgcttgtgaagtaaggctcaa |
321 |
Q |
| |
|
|||||||| |||||||||||||||||| ||||||||||||||||||| || || | ||||||||| |||||||| ||| |||||| | ||||||| |
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| T |
24038434 |
ttaccttccccagcagccaaattgaagtaaaggtcaacaatattggggcaattttggtaacaagatgatgaacaaagtttggctgtgaattgtggctcaa |
24038533 |
T |
|
| Q |
322 |
agaaagcatcagatgaaataccaacagaacttctatcaacaccacatgcttccacacattggtctgtctctatgtatgctgctattctctccaccataac |
421 |
Q |
| |
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|| ||||| || ||||| || ||| || | || ||||| |||||||||| ||||||||| ||||||||||||||| | || |||| ||||| || || |
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| T |
24038534 |
gcaatgcatcggaagaaattccgacaaaattcctttcaactccacatgctttcacacattgatctgtctctatgtatcccgccattcgctccaacactac |
24038633 |
T |
|
| Q |
422 |
ttcagatgttcgacattgatactcg |
446 |
Q |
| |
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||| ||||| | ||||||||||||| |
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|
| T |
24038634 |
ttctgatgtcctacattgatactcg |
24038658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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