View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10143_low_3 (Length: 301)
Name: NF10143_low_3
Description: NF10143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10143_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 293
Target Start/End: Original strand, 8420596 - 8420876
Alignment:
| Q |
1 |
gagtgactccttttgttgctgagtcaaaacactactctcatattagtcacgttgctcttgtttacttattagcatgccttcctaaagataaggaatccac |
100 |
Q |
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| T |
8420596 |
gagtgtctccttttgttgctgagtcaaaacactactctcctattaatcacgttgctgttgtttacttattagcatgccttcctaaagataaggaatcca- |
8420694 |
T |
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| Q |
101 |
cctcaactacttcctatagttatagttatgctacgagtgatcgactcaattaaaataaacctagatttcatttctttattattctgattttgttcaagaa |
200 |
Q |
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| T |
8420695 |
cctcaactacttcctatagttatagttatgctatgagt----gactcaattaaaataaacctagttttcatttctttattattctgattttgttcaaaag |
8420790 |
T |
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| Q |
201 |
ggacggttatttgtatatgtatctacctataataattttcttagggataacacacaattaggaagagactgagaacatttcctactctctgct |
293 |
Q |
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| T |
8420791 |
ggacggttatttgtatatgtatctacctataataattt-------gataacacacaattaggaagagactgagaacatttcctactctctgct |
8420876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 144; Significance: 1e-75; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 49171707 - 49171545
Alignment:
| Q |
1 |
gagtgactccttttgttgctgagtcaaaacactactctcatattagtcacgttgctcttgtttacttattagcatgccttcctaaagataaggaatccac |
100 |
Q |
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| T |
49171707 |
gagtgactccttttgttgctgagttaaaacactactctcctattagtcacgttgctcttatttacttattagcatgccttcctaaagataaggaatcca- |
49171609 |
T |
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| Q |
101 |
cctcaactacttcctatagttatagttatgctacgagtgatcgactcaattaaaataaacctag |
164 |
Q |
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| T |
49171608 |
cctcaactacttcctatagttatagttatgctacgagtgatcgactcaattaaaataaacctag |
49171545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 171 - 293
Target Start/End: Complemental strand, 49171361 - 49171239
Alignment:
| Q |
171 |
tttctttattattctgattttgttcaagaaggacggttatttgtatatgtatctacctataataattttcttagggataacacacaattaggaagagact |
270 |
Q |
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| T |
49171361 |
tttctttattattctgattttgttcaagaaggacggttatttgtatatgtatctacctataataattttcttagggataacacacaattaggaagagact |
49171262 |
T |
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| Q |
271 |
gagaacatttcctactctctgct |
293 |
Q |
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| T |
49171261 |
gagaacatttcctactctctgct |
49171239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 9 - 293
Target Start/End: Complemental strand, 21492594 - 21492315
Alignment:
| Q |
9 |
ccttttgttgctgagtcaaaacactactctcatattagtcacgttgctcttgtttacttattagcatgccttcctaaagataaggaatccacc------- |
101 |
Q |
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| T |
21492594 |
ccttttgttgctgagtcaaaacactactctcttgttagtcacgttgctgttgtttacttattagtatgccttcctaaagataaggaatccacctcccatg |
21492495 |
T |
|
| Q |
102 |
-ctcaactacttcctatagttatagttatgctacgagtgatcgactcaattaaaataaacctagatttcatttctttattattctga-ttttgttcaaga |
199 |
Q |
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| T |
21492494 |
gttcaactacctcc------tatagttatgctatgagt----ggctcaattaaaataaacttagttttcttttctttatttttctgatttttgttcaaga |
21492405 |
T |
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| Q |
200 |
aggacggttatttgtatatgtatctacctataataattttcttagggataacacacaattaggaagagactgagaacatttcctactctctgct |
293 |
Q |
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| T |
21492404 |
ggggcggttttt----catatatctagctataataattttcctagggataacatacaattaggaagagaccaataacgtttcctactatctgct |
21492315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 148 - 225
Target Start/End: Original strand, 45232599 - 45232677
Alignment:
| Q |
148 |
aattaaaataaacctagatttcatttctttattatt-ctgattttgttcaagaaggacggttatttgtatatgtatcta |
225 |
Q |
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| T |
45232599 |
aattaaaacaaacatagttttcttttctttatttttgctgattttgttcaagagggacggttatatatatacgtatcta |
45232677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 39
Target Start/End: Original strand, 8730277 - 8730306
Alignment:
| Q |
10 |
cttttgttgctgagtcaaaacactactctc |
39 |
Q |
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| T |
8730277 |
cttttgttgctgagtcaaaacactactctc |
8730306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 39
Target Start/End: Original strand, 9082164 - 9082193
Alignment:
| Q |
10 |
cttttgttgctgagtcaaaacactactctc |
39 |
Q |
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| T |
9082164 |
cttttgttgctgagtcaaaacactactctc |
9082193 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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