View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10144_low_1 (Length: 432)
Name: NF10144_low_1
Description: NF10144
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10144_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 11 - 271
Target Start/End: Original strand, 3253644 - 3253904
Alignment:
| Q |
11 |
cagagagaattaaatcaacaccattattggatttgattgaaacatcttggtaaatgtcccacattgtctagaattatttgaaacatctatgctttcgttc |
110 |
Q |
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| T |
3253644 |
cagagagaattaaatcaacaccattattggatttgattgaaacatcttggtaaatgtcccacattgtctagaattatttgaaacatctatgctttcgttc |
3253743 |
T |
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| Q |
111 |
tttgttacacgacacttcaattagaaatactttaaatttgtacgtttttcttctttctcttatattattatctagagtattgtgagatatagttcaatat |
210 |
Q |
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| T |
3253744 |
tttgttacacgacacttcaattagaaatactttaaatttgtacgtttttcttctttctcttatattattatctagagtattgtgagatatagttcaatat |
3253843 |
T |
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| Q |
211 |
atattgatttaataattttaacatattgttattatgtgattgtcattagataacgactatg |
271 |
Q |
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| T |
3253844 |
atattgatttaataattttaacatattgttattatgtgattgtcattagataacgactatg |
3253904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 334 - 429
Target Start/End: Original strand, 3253973 - 3254068
Alignment:
| Q |
334 |
gaacatttggaaaattgacgatgttgtatgaaacaaaatgttgggaggtgaaaaaccaatacaagataaaatcagcgtagcagagacgagaatgtt |
429 |
Q |
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| T |
3253973 |
gaacatttggaaaatcgacgatgttgtatgaaacaaaatgttgggagatgaaaaaccaatacaagataaaatcagcgtagcagagacgagaatgtt |
3254068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 349 - 385
Target Start/End: Original strand, 52837067 - 52837103
Alignment:
| Q |
349 |
tgacgatgttgtatgaaacaaaatgttgggaggtgaa |
385 |
Q |
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| T |
52837067 |
tgacaatgttgtatgaaacagaatgttgggaggtgaa |
52837103 |
T |
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