View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10144_low_2 (Length: 405)
Name: NF10144_low_2
Description: NF10144
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10144_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 91 - 392
Target Start/End: Complemental strand, 36073621 - 36073319
Alignment:
| Q |
91 |
tgaagaagataaagtaccgaaactgaacaaagcttggtatggcttaaagcaagcaccaagagcctggaatataagaacatatgattttctcaagcaaaat |
190 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36073621 |
tgaagaagataaagtaccgaaactgaacaaagcttggtatggcttaaagcaagcaccaagagcctggaatataagaacatatgattttctcaagcaaaat |
36073522 |
T |
|
| Q |
191 |
agctactcaaaatgcacagttgagcatggaatctatgttg-aaggcacaaatcagaacaacattaacataatttgcttgtatgttgatgatttactgata |
289 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
36073521 |
agctactcaaaatgcacagttgagcatggaatctatgttggaaggcacaaatcagaacaacattaacataatttgcttatatgttgatgatttactgata |
36073422 |
T |
|
| Q |
290 |
actagaaacaacttagatgaagtttaaagaatcaaagatcagttaagctctgagtttgatatgactaaattatgaaagttgagatatttccttggtttag |
389 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
36073421 |
actagaaacaacttagatgaagtttaaagaatcaaagatcagttaagctctgagtttgatatgactaaattatgaaaattgagatatttccttggtttag |
36073322 |
T |
|
| Q |
390 |
aat |
392 |
Q |
| |
|
||| |
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|
| T |
36073321 |
aat |
36073319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 11 - 93
Target Start/End: Complemental strand, 36074995 - 36074917
Alignment:
| Q |
11 |
caaaggagtcaatgatagtactgtttgctccaaataacaatggttgctaggattcatacataagtcaagatgttgaaggatga |
93 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
36074995 |
caaaggattcaatgatagtactgtttgctccaaataacaatggttgctaggatt----cataagtcaagatgttgaaggatga |
36074917 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 95; Significance: 2e-46; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 91 - 353
Target Start/End: Complemental strand, 12448320 - 12448058
Alignment:
| Q |
91 |
tgaagaagataaagtaccgaaactgaacaaagcttggtatggcttaaagcaagcaccaagagcctggaatataagaacatatgattttctcaagcaaaat |
190 |
Q |
| |
|
||||||||||||||||| || | |||||||||| ||||||||||||||| ||| |||| ||||||||| | | |||| ||||||||| ||||| |
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| T |
12448320 |
tgaagaagataaagtacttaagatcaacaaagctttatatggcttaaagcaatcacgaagaatctggaatatgacagttgatgaatttctcaagaaaaat |
12448221 |
T |
|
| Q |
191 |
agctactcaaaatgcacagttgagcatggaatctatgttgaaggcacaaatcagaacaacattaacataatttgcttgtatgttgatgatttactgataa |
290 |
Q |
| |
|
|||||||| |||||||| ||||||||| ||| ||||| |||| || ||| ||||||||||| ||||| ||||| | |||||||||||||| |||||| |
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| T |
12448220 |
ggctactcagaatgcacaattgagcatgaaatttatgtcaaaggtaccaataagaacaacattgacatagtttgcctatatgttgatgatttgctgatag |
12448121 |
T |
|
| Q |
291 |
ctagaaacaacttagatgaagtttaaagaatcaaagatcagttaagctctgagtttgatatga |
353 |
Q |
| |
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|| ||||| ||||||||||||| |||||| ||||| ||||||||||||||| |||||||||| |
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|
| T |
12448120 |
cttaaaacagcttagatgaagttgaaagaaacaaaggtcagttaagctctgaatttgatatga |
12448058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 112 - 167
Target Start/End: Original strand, 33684732 - 33684787
Alignment:
| Q |
112 |
actgaacaaagcttggtatggcttaaagcaagcaccaagagcctggaatataagaa |
167 |
Q |
| |
|
|||||||||| ||| |||||||||||| ||||||||||||||||| |||| ||||| |
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| T |
33684732 |
actgaacaaaactttgtatggcttaaaacaagcaccaagagcctgaaataaaagaa |
33684787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 112 - 167
Target Start/End: Original strand, 33701786 - 33701841
Alignment:
| Q |
112 |
actgaacaaagcttggtatggcttaaagcaagcaccaagagcctggaatataagaa |
167 |
Q |
| |
|
|||||||||| ||| |||||||||||| ||||||||||||||||| |||| ||||| |
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|
| T |
33701786 |
actgaacaaaactttgtatggcttaaaacaagcaccaagagcctgaaataaaagaa |
33701841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 132 - 282
Target Start/End: Original strand, 6362818 - 6362966
Alignment:
| Q |
132 |
gcttaaagcaagcaccaagagcctggaatataagaacatatgattttctcaagcaaaatagctactcaaaatgcacagttgagcatggaatctatgttga |
231 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||| |||| ||||||||| ||||| |||||||| |||||||||||||||||||||||||||| | |
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| T |
6362818 |
gcttaaagcaagcaccaagagcctataatt--agaattgatgagtttctcaaggaaaatggctactcataatgcacagttgagcatggaatctatgtcaa |
6362915 |
T |
|
| Q |
232 |
aggcacaaatcagaacaacattaacataatttgcttgtatgttgatgattt |
282 |
Q |
| |
|
||| | ||||||||||| | |||||| ||||||| || ||| ||||||| |
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|
| T |
6362916 |
aggtgccaatcagaacaatgtcaacatagtttgcttataagttaatgattt |
6362966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 112 - 172
Target Start/End: Original strand, 25546699 - 25546759
Alignment:
| Q |
112 |
actgaacaaagcttggtatggcttaaagcaagcaccaagagcctggaatataagaacatat |
172 |
Q |
| |
|
|||||||||||||| |||||| ||||||||||||| ||||||||||||| ||||| |||| |
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|
| T |
25546699 |
actgaacaaagctttctatggcctaaagcaagcacctagagcctggaatagaagaatatat |
25546759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 93 - 161
Target Start/End: Original strand, 39735144 - 39735212
Alignment:
| Q |
93 |
aagaagataaagtaccgaaactgaacaaagcttggtatggcttaaagcaagcaccaagagcctggaata |
161 |
Q |
| |
|
||||||||| |||| ||| |||||||||||| ||||| ||| || |||||||| ||||||||||||| |
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| T |
39735144 |
aagaagatagagtatttaaattgaacaaagctttgtatgacttgaaacaagcacctagagcctggaata |
39735212 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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