View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10145A_high_17 (Length: 275)
Name: NF10145A_high_17
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_high_17 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 9 - 275
Target Start/End: Original strand, 12686478 - 12686745
Alignment:
| Q |
9 |
tggtgttcgtatccatattcgtgtttcgtagtttgtaactctacgtggattgattattgaaaaactatttcttgttgtactctcctaaaggttcaatctg |
108 |
Q |
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| T |
12686478 |
tggtgttcgtgtccatatccgtgtttcatagtttgtaactctacatggattgattattgaaaaactatttcttgttgtactctcctaaaggttcaatctg |
12686577 |
T |
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| Q |
109 |
atcatcactctattctcttcacttttgatactaatgcacaaatttttccttcttcctttaaa-tttaaaagaaaaaagtggacttttcatgattattgta |
207 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |
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| T |
12686578 |
atcatcactctattctcttcgcttttgatactaatgcacaaatttttccttcttcctttaaattttttttaaaaaaagtggacttttcatgattattgta |
12686677 |
T |
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| Q |
208 |
aacatgtcatatattcaaagtttatttaatctgctaaactcaaagctttgaagcttattcctaagaaa |
275 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12686678 |
aacatgtcatatattcaaagtttatttaatctgctaaactcaaagctttgaagcttattcctaagaaa |
12686745 |
T |
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