View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10145A_low_101 (Length: 374)
Name: NF10145A_low_101
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_101 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 22 - 374
Target Start/End: Complemental strand, 39479992 - 39479636
Alignment:
| Q |
22 |
gtgaatatatagcattaggaggataaaa-caataacatgaaaaatattctttacttagagataaaagcattggagnnnnnnnnnnnnnnnn-cgggaacc |
119 |
Q |
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| T |
39479992 |
gtgaatatatagccttaggaggacaaaaacaataacatgaaaaatattctttacttagagataaaagcattggaggaaaaagaaaaagaaaacgggaacc |
39479893 |
T |
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| Q |
120 |
accatgagagtatcgtagagagattcttgatgattcattgttaagtcatgtttgaattttaaggtttgtgactctcacattcatgtggttagacagattc |
219 |
Q |
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| T |
39479892 |
accatgagagtatcgtagagagattcttgatgattcattgttaagtcatatttgaattttaaggtttgtgactctcacattcatgtggttagacggattc |
39479793 |
T |
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| Q |
220 |
ttcaaatttcattctattaattgcaaatttg----tatttaagagggaatgagacactcaatggcggacatttagttgtatatattgatgatatgtccaa |
315 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |
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| T |
39479792 |
ttcaaatttcattctattaattgcaaatttgtatatatttaagagggaatgagacactcaatggcggacatttagttttatatattgatg--atgtccaa |
39479695 |
T |
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| Q |
316 |
cgagaatctaacattttagggnnnnnnnagacatttaattttatatttattgatattga |
374 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
39479694 |
cgagaatctaacattttagggtttttttagacatttaattttatatttattgatattga |
39479636 |
T |
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