View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10145A_low_103 (Length: 369)
Name: NF10145A_low_103
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_103 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 169; Significance: 1e-90; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 185 - 369
Target Start/End: Original strand, 29674509 - 29674693
Alignment:
| Q |
185 |
attgtcacaaaatagttctttatgtgaattttgaacatccaagtgatcccatgatttattgaacaagaagaggttggtcattaacttcaagttgttccta |
284 |
Q |
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| T |
29674509 |
attgtcacaaaatagttctttatgtgtattttgaacatccaagtgatcccatgatttattgaacaagaagaggttgttcattaacttgaagttgttccta |
29674608 |
T |
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| Q |
285 |
tcgaaagtttattagtcggatgaggttgttaatgatgttgaattattgataatgaagctcaagaggttaataaggttgttattga |
369 |
Q |
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| T |
29674609 |
tcgaaagtttattaatcggatgaggttgttaatgatgttgaattattgataatgaagctcaagaggttaataaggttgttattga |
29674693 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 29674299 - 29674341
Alignment:
| Q |
1 |
atgaatatgatcgtgtagttggttaggaaatgagttgactgtt |
43 |
Q |
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| T |
29674299 |
atgaatatgatcgtgtagttggttaggaaatgagttgactgtt |
29674341 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 28 - 89
Target Start/End: Original strand, 29674363 - 29674425
Alignment:
| Q |
28 |
aaatgagttgactgttgtaaatgggacccatgtaaaattcgg-cacaaatgatatttaagata |
89 |
Q |
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| T |
29674363 |
aaatgagttgactgttgtaaatggaacctatgtaaaattcggtcagaaattatatttaagata |
29674425 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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