View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10145A_low_104 (Length: 367)

Name: NF10145A_low_104
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10145A_low_104
NF10145A_low_104
[»] chr3 (29 HSPs)
chr3 (1-348)||(41985502-41985852)
chr3 (1-346)||(41980728-41981073)
chr3 (90-229)||(9494822-9494961)
chr3 (85-243)||(9407324-9407482)
chr3 (80-240)||(9425526-9425686)
chr3 (105-243)||(9343823-9343961)
chr3 (127-348)||(9448314-9448535)
chr3 (95-243)||(9329804-9329952)
chr3 (87-243)||(9617463-9617619)
chr3 (95-243)||(9336508-9336656)
chr3 (85-243)||(9397743-9397903)
chr3 (108-240)||(9655360-9655492)
chr3 (95-243)||(9695616-9695764)
chr3 (108-240)||(9646367-9646499)
chr3 (97-229)||(9352871-9353003)
chr3 (83-243)||(9432852-9433012)
chr3 (88-243)||(9416534-9416689)
chr3 (135-228)||(9340679-9340772)
chr3 (97-190)||(9377056-9377149)
chr3 (92-187)||(9614009-9614104)
chr3 (97-235)||(9626488-9626626)
chr3 (109-209)||(9441815-9441915)
chr3 (97-228)||(9347957-9348088)
chr3 (97-228)||(9369611-9369742)
chr3 (128-249)||(9756381-9756502)
chr3 (195-243)||(9686751-9686799)
chr3 (3-51)||(16011844-16011892)
chr3 (1-48)||(9695838-9695885)
chr3 (128-157)||(16011768-16011797)
[»] chr8 (3 HSPs)
chr8 (1-348)||(44688680-44689027)
chr8 (183-348)||(13170579-13170744)
chr8 (7-123)||(13170758-13170874)
[»] chr1 (8 HSPs)
chr1 (36-348)||(18991113-18991422)
chr1 (87-238)||(4428591-4428742)
chr1 (87-194)||(4439820-4439927)
chr1 (109-225)||(235195-235311)
chr1 (105-220)||(8814385-8814500)
chr1 (101-218)||(246841-246958)
chr1 (122-225)||(251412-251515)
chr1 (135-220)||(231589-231674)
[»] chr2 (1 HSPs)
chr2 (97-240)||(20694304-20694447)
[»] chr6 (7 HSPs)
chr6 (95-243)||(7041464-7041612)
chr6 (89-225)||(7046801-7046937)
chr6 (97-225)||(7025720-7025854)
chr6 (97-225)||(7012784-7012918)
chr6 (164-225)||(7029850-7029911)
chr6 (98-223)||(9159515-9159646)
chr6 (98-225)||(9170782-9170915)
[»] chr7 (3 HSPs)
chr7 (98-230)||(3695661-3695792)
chr7 (135-243)||(450111-450219)
chr7 (3-51)||(450315-450363)
[»] chr5 (2 HSPs)
chr5 (105-229)||(18571086-18571213)
chr5 (98-225)||(33541623-33541750)


Alignment Details
Target: chr3 (Bit Score: 317; Significance: 1e-179; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 1 - 348
Target Start/End: Original strand, 41985502 - 41985852
Alignment:
Q  1 caggataatcagacaaaggggaaacccggcattgatccaagtgaaaaacacacatcccacaaagcatctggtcaaaatcgttgaatgcatcatcactaaa 100  Q
    |||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  41985502 caggataatcagacaaaggggaaacccaacattgatccaagtgaaaaacacacatcccacaaagcatctggtcaaaatcgtagaatgcatcatcactaaa 41985601  T
Q  101 gatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaac 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41985602 gatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaac 41985701  T
Q  201 ttgacccatttcttctccttctcatcaagtctgaacacatcaagctttaaaccatcttcaccagggaaaccaaaacaatgagagtcatatatgtctacta 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  41985702 ttgacccatttcttctccttctcatcaagtctgaacacatcaagctttaaaccatcttcaccggggaaaccaaaacaatgagagtcatatatgtctacta 41985801  T
Q  301 gcaacaac---tcacgctcactctctaccaggaatttcatgtcccctccat 348  Q
    ||||||||   |||| |||||||||||||||||||||||||||||||||||    
T  41985802 gcaacaactgatcaccctcactctctaccaggaatttcatgtcccctccat 41985852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 346
Target Start/End: Original strand, 41980728 - 41981073
Alignment:
Q  1 caggataatcagacaaaggggaaacccggcattgatccaagtgaaaaacacacatcccacaaagcatctggtcaaaatcgttgaatgcatcatcactaaa 100  Q
    |||||||||| |||||||||||||| || | ||||||||||||||||| |||||||||||| ||||| | || ||||  |  |||||||||| ||  |||    
T  41980728 caggataatcggacaaaggggaaacacgaccttgatccaagtgaaaaatacacatcccacatagcattttgttaaaagggaggaatgcatcaccaacaaa 41980827  T
Q  101 gatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaac 200  Q
    ||| | ||||||||||||||||||||||||||  |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  41980828 gataatacaatttcctttgacaacagacaaatttgaagcagaagcaaaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgtcaac 41980927  T
Q  201 ttgacccatttcttctccttctcatcaagtctgaacacatcaagctttaaaccatcttcaccagggaaaccaaaacaatgagagtcatatatgtctacta 300  Q
    ||||||||||||||||| |||| | |||| || ||||||||||| || |||||||||||||||||||| |||| ||||||||||| ||| ||||| ||||    
T  41980928 ttgacccatttcttctctttcttagcaagcctaaacacatcaagattgaaaccatcttcaccagggaacccaacacaatgagagtgataaatgtccacta 41981027  T
Q  301 gcaacaactcacgctcactctctaccaggaatttcatgtcccctcc 346  Q
    |||| || |||| |||||||||||||||||||||||  ||||||||    
T  41981028 gcaataattcaccctcactctctaccaggaatttcacatcccctcc 41981073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 90 - 229
Target Start/End: Complemental strand, 9494961 - 9494822
Alignment:
Q  90 tcatcactaaagatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatccccta 189  Q
    |||||| |||||||||||||||| ||||||  |||  ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  9494961 tcatcaataaagatgacacaattccctttggaaacgcacaaatcagaagcagaagcagaaaacgaacatccattccccaagaacaaaaccctatccccta 9494862  T
Q  190 aactcgccaacttgacccatttcttctccttctcatcaag 229  Q
    |||||  ||| || |||||| || ||||||||||||||||    
T  9494861 aactcatcaaattcacccatctcatctccttctcatcaag 9494822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 85 - 243
Target Start/End: Original strand, 9407324 - 9407482
Alignment:
Q  85 atgcatcatcactaaagatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatc 184  Q
    ||||||||||| |||||| ||||||||| |||||| ||||| ||||||||||||| ||||||||||| |||||||||||| | ||||||||||| |||||    
T  9407324 atgcatcatcaataaagaagacacaattccctttggcaacacacaaatccgaagctgaagcagaaaatgaacatccattcacaaagaacaaaaccctatc 9407423  T
Q  185 ccctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacacatcaa 243  Q
    ||||||||||  |||||| |||||| | || | |||||| |||||||| ||||||||||    
T  9407424 ccctaaactcatcaacttcacccatcttttattcttctcgtcaagtctaaacacatcaa 9407482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 80 - 240
Target Start/End: Original strand, 9425526 - 9425686
Alignment:
Q  80 gttgaatgcatcatcactaaagatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaact 179  Q
    |||| ||||||||||  |||||||||||||||| |||||| ||||| ||||||||||||| ||||||||||| |||||||||||| | |||||||||||     
T  9425526 gttgtatgcatcatcgataaagatgacacaattccctttggcaacacacaaatccgaagctgaagcagaaaatgaacatccattcacaaagaacaaaacc 9425625  T
Q  180 ctatcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacacat 240  Q
    |||| || |||||||  |||||| |||||||| || | |||||| |||||||| |||||||    
T  9425626 ctattccttaaactcatcaacttcacccattttttattcttctcgtcaagtctaaacacat 9425686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 105 - 243
Target Start/End: Original strand, 9343823 - 9343961
Alignment:
Q  105 acacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttga 204  Q
    |||||||||||| |   |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| | |  ||||| |    
T  9343823 acacaatttcctctaggaacacacaaatccgaagcagaagcagaaaacgaacattcattccccaagaacaaaacactatcccctaaagttgttaacttca 9343922  T
Q  205 cccatttcttctccttctcatcaagtctgaacacatcaa 243  Q
    |||| ||||||||| ||||||||||  | ||||||||||    
T  9343923 cccacttcttctccatctcatcaagcttaaacacatcaa 9343961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 127 - 348
Target Start/End: Original strand, 9448314 - 9448535
Alignment:
Q  127 acaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatc 226  Q
    |||||||||||||||||||||||||||||||  ||||||||||||||||||| |||||||||||| | |  ||||| ||||||||||||||||||||||     
T  9448314 acaaatccgaagcagaagcagaaaacgaacagtcattccccaagaacaaaacactatcccctaaagttgttaacttcacccatttcttctccttctcata 9448413  T
Q  227 aagtctgaacacatcaagctttaaaccatcttcaccagggaaaccaaaacaatgagagtcatatatgtctactagcaacaactcacgctcactctctacc 326  Q
    |||  | |||||||||| | ||| | ||||   ||| |||||  | ||||||  | | ||||| ||||| ||||||||||| || | ||| || || ||     
T  9448414 aagcttaaacacatcaacccttatagcatcaggacccgggaactcgaaacaaaaacactcataaatgtccactagcaacaagtctccctctctatcaact 9448513  T
Q  327 aggaatttcatgtcccctccat 348  Q
    | |||||| |||||||||||||    
T  9448514 aagaattttatgtcccctccat 9448535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 95 - 243
Target Start/End: Original strand, 9329804 - 9329952
Alignment:
Q  95 actaaagatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactc 194  Q
    |||| ||||||||||||| || ||| ||| |  ||| || ||||||||||||||||||||| ||||||||||||||||||||||  |||| |||||| ||    
T  9329804 actatagatgacacaattcccattggcaaaacccaactcggaagcagaagcagaaaacgaatatccattccccaagaacaaaaccttatctcctaaattc 9329903  T
Q  195 gccaacttgacccatttcttctccttctcatcaagtctgaacacatcaa 243  Q
    ||||||||||||||  | ||||| ||||||||||| || ||||||||||    
T  9329904 gccaacttgacccaccttttctctttctcatcaagcctaaacacatcaa 9329952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 87 - 243
Target Start/End: Complemental strand, 9617619 - 9617463
Alignment:
Q  87 gcatcatcactaaagatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatccc 186  Q
    ||||| ||| |||||||||||||||| ||||||  |||| ||||||| ||||||||||||||||| |||||||||||| | | ||||||||| |||||||    
T  9617619 gcatcgtcaataaagatgacacaattccctttggaaacacacaaatctgaagcagaagcagaaaatgaacatccattcacaaggaacaaaaccctatccc 9617520  T
Q  187 ctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacacatcaa 243  Q
    ||||| |   |||||| |||||||||||||| ||||||| ||  |||||||| ||||    
T  9617519 ctaaatttttcaacttcacccatttcttctctttctcatgaaacctgaacacttcaa 9617463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 95 - 243
Target Start/End: Original strand, 9336508 - 9336656
Alignment:
Q  95 actaaagatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactc 194  Q
    |||| ||||||||||||| || ||| ||| |  ||| || ||||||||||||||||||||||||||||||||||||||||||||  |||| |||||| ||    
T  9336508 actatagatgacacaattcccattggcaaaacccaactcggaagcagaagcagaaaacgaacatccattccccaagaacaaaaccttatctcctaaattc 9336607  T
Q  195 gccaacttgacccatttcttctccttctcatcaagtctgaacacatcaa 243  Q
    | || |||||||||  | ||||| ||||||||||| || ||||||||||    
T  9336608 gtcagcttgacccaccttttctctttctcatcaagcctaaacacatcaa 9336656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 85 - 243
Target Start/End: Original strand, 9397743 - 9397903
Alignment:
Q  85 atgcatcatcactaaagatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatc 184  Q
    ||||||||||| |||||| ||||||||| |||||| ||||| |||||||| |||| ||||| ||||| |||||||||||| | |||||||| || |||||    
T  9397743 atgcatcatcaataaagacgacacaattccctttggcaacacacaaatccaaagctgaagcggaaaatgaacatccattcacaaagaacaagaccctatc 9397842  T
Q  185 ccctaaactcgccaacttgaccca--tttcttctccttctcatcaagtctgaacacatcaa 243  Q
    ||||||||||  |||||| || ||  ||| || | |||||| |||||||| ||||||||||    
T  9397843 ccctaaactcatcaacttcacgcattttttttatacttctcgtcaagtctaaacacatcaa 9397903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 108 - 240
Target Start/End: Complemental strand, 9655492 - 9655360
Alignment:
Q  108 caatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgaccc 207  Q
    ||||| ||||||  |||| ||||||||||||| || ||||||||||||||||| |  ||||| |||||||| |||||||||||| ||  |||||| ||||    
T  9655492 caattccctttggaaacacacaaatccgaagctgatgcagaaaacgaacatccttcgcccaaaaacaaaaccctatcccctaaattcatcaacttcaccc 9655393  T
Q  208 atttcttctccttctcatcaagtctgaacacat 240  Q
    |||||||||||||||||| || |||||| ||||    
T  9655392 atttcttctccttctcatgaaatctgaaaacat 9655360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 95 - 243
Target Start/End: Complemental strand, 9695764 - 9695616
Alignment:
Q  95 actaaagatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactc 194  Q
    |||| ||||||||||||| || ||  ||||| |||| || |||||||| ||||| ||||||||  | | |||||| |||||||| |||||||||||| |     
T  9695764 actatagatgacacaattcccatttgcaacacacaactctgaagcagatgcagagaacgaacagtcttcccccaaaaacaaaaccctatcccctaaattg 9695665  T
Q  195 gccaacttgacccatttcttctccttctcatcaagtctgaacacatcaa 243  Q
    | |||||||||||| |||||||||||||||||||| ||||| |||||||    
T  9695664 gtcaacttgacccacttcttctccttctcatcaagcctgaatacatcaa 9695616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 108 - 240
Target Start/End: Complemental strand, 9646499 - 9646367
Alignment:
Q  108 caatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgaccc 207  Q
    ||||| ||||||  |||| ||||||||||||| || ||||||||||||||||| |  || || |||||||| |||||||||||| ||  |||||| ||||    
T  9646499 caattccctttggaaacacacaaatccgaagctgatgcagaaaacgaacatccttcgccaaaaaacaaaaccctatcccctaaattcatcaacttcaccc 9646400  T
Q  208 atttcttctccttctcatcaagtctgaacacat 240  Q
    |||||||||||||||||| || |||||| ||||    
T  9646399 atttcttctccttctcatgaaatctgaaaacat 9646367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 97 - 229
Target Start/End: Original strand, 9352871 - 9353003
Alignment:
Q  97 taaagatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgc 196  Q
    |||||||||||||||||||||||  || | ||| |||| || ||||||||||||||||||||||| ||||||  |||||||| ||| |||||||  |       
T  9352871 taaagatgacacaatttcctttgggaagacacagatcccaaccagaagcagaaaacgaacatccactccccacaaacaaaaccctaccccctaatttttt 9352970  T
Q  197 caacttgacccatttcttctccttctcatcaag 229  Q
    |||||| ||||| ||||||||| ||||||||||    
T  9352971 caacttcacccacttcttctccatctcatcaag 9353003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 83 - 243
Target Start/End: Original strand, 9432852 - 9433012
Alignment:
Q  83 gaatgcatcatcactaaagatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactcta 182  Q
    |||| |||||||| ||||||||| |||||| |||| |  |||| |||||||||| || ||||||||||| ||| || ||  ||| | ||||||||| |||    
T  9432852 gaatacatcatcaataaagatgatacaattcccttcggaaacacacaaatccgaggctgaagcagaaaaggaatattcaagccctatgaacaaaacccta 9432951  T
Q  183 tcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacacatcaa 243  Q
    || |||||| ||   | ||| ||||| ||| |||||||||||||||||||||| |||||||    
T  9432952 tctcctaaattcttgatcttcacccacttcctctccttctcatcaagtctgaaaacatcaa 9433012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 88 - 243
Target Start/End: Original strand, 9416534 - 9416689
Alignment:
Q  88 catcatcactaaagatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccc 187  Q
    |||||||| ||||||  |||||||| |||||   |||| ||| |||| | || ||||||||||| ||||||  |||| | |||||||| || ||||||||    
T  9416534 catcatcaataaagacaacacaattccctttagtaacacacatatccaaggctgaagcagaaaatgaacatttattcacgaagaacaacaccctatcccc 9416633  T
Q  188 taaactcgccaacttgacccatttcttctccttctcatcaagtctgaacacatcaa 243  Q
    |||||||| |||||| |||||||| || | |||||| ||||| | |||||||||||    
T  9416634 taaactcgtcaacttcacccattttttattcttctcgtcaagacagaacacatcaa 9416689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 135 - 228
Target Start/End: Original strand, 9340679 - 9340772
Alignment:
Q  135 gaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaa 228  Q
    |||||||||||||||||||||||||||  ||| | ||| ||||| |||||||| ||| ||  |||||| ||||| |||||||||||||||||||    
T  9340679 gaagcagaagcagaaaacgaacatccacgcccaatgaaaaaaaccctatccccgaaattcctcaacttcacccacttcttctccttctcatcaa 9340772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 97 - 190
Target Start/End: Original strand, 9377056 - 9377149
Alignment:
Q  97 taaagatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaa 190  Q
    |||||||||||||||||||||||  || | ||| |||| |||||||||||| ||||||||||||| ||||||  |||||||  |||||||||||    
T  9377056 taaagatgacacaatttcctttgggaagacacagatcccaagcagaagcaggaaacgaacatccactccccacaaacaaaatcctatcccctaa 9377149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 92 - 187
Target Start/End: Complemental strand, 9614104 - 9614009
Alignment:
Q  92 atcactaaagatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccc 187  Q
    |||| ||||||| |||||||||||||||  || | ||| ||| ||||||||||||||||| ||||||||| |||||||||| |||||  |||||||    
T  9614104 atcaataaagataacacaatttcctttggtaagacacagatctgaagcagaagcagaaaatgaacatccactccccaagaaaaaaaccatatcccc 9614009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 97 - 235
Target Start/End: Complemental strand, 9626626 - 9626488
Alignment:
Q  97 taaagatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgc 196  Q
    |||||||||  ||||| ||||||  |||| ||||||||||||| || |||||||| ||   ||| || || || |||||||| |||||||||||| ||      
T  9626626 taaagatgatgcaattccctttggaaacacacaaatccgaagctgatgcagaaaatgatgttcctttgccaaaaaacaaaaccctatcccctaaattcat 9626527  T
Q  197 caacttgacccatttcttctccttctcatcaagtctgaa 235  Q
    ||| || |||||||||||||||||||||| || ||||||    
T  9626526 caaattcacccatttcttctccttctcatgaaatctgaa 9626488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 109 - 209
Target Start/End: Complemental strand, 9441915 - 9441815
Alignment:
Q  109 aatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgaccca 208  Q
    |||| |||||||||||| ||| |||| | || ||||||||||| ||||||  |||| | ||||||||||| |||||||||||||||  |||||| |||||    
T  9441915 aattccctttgacaacacacatatccaaggctgaagcagaaaatgaacatttattcacaaagaacaaaaccctatcccctaaactcatcaacttcaccca 9441816  T
Q  209 t 209  Q
    |    
T  9441815 t 9441815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 97 - 228
Target Start/End: Original strand, 9347957 - 9348088
Alignment:
Q  97 taaagatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgc 196  Q
    |||||| |||||||||||||||   || | | | ||| |||||||||||||||||||||||||||  ||| | ||| ||||  |||||||| |||  |      
T  9347957 taaagacgacacaatttcctttcggaatacatagatctgaagcagaagcagaaaacgaacatccacgcccaatgaaaaaaatcctatccccaaaatgcct 9348056  T
Q  197 caacttgacccatttcttctccttctcatcaa 228  Q
    |||||| ||||| |||||||||||||||||||    
T  9348057 caacttcacccacttcttctccttctcatcaa 9348088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 97 - 228
Target Start/End: Original strand, 9369611 - 9369742
Alignment:
Q  97 taaagatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgc 196  Q
    |||||| |||||||||||||||   || | | | ||| |||||||||||||||||||||||||||  ||| | ||| ||||  |||||||| |||  |      
T  9369611 taaagacgacacaatttcctttcggaatacatagatctgaagcagaagcagaaaacgaacatccacgcccaatgaaaaaaatcctatccccaaaatgcct 9369710  T
Q  197 caacttgacccatttcttctccttctcatcaa 228  Q
    |||||| ||||| |||||||||||||||||||    
T  9369711 caacttcacccacttcttctccttctcatcaa 9369742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 128 - 249
Target Start/End: Original strand, 9756381 - 9756502
Alignment:
Q  128 caaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatca 227  Q
    ||||||||| ||||| ||||| || ||||| || | ||| || |||||||| |||||||| ||| || |||||||||||||  | ||||| |||||||||    
T  9756381 caaatccgatgcagatgcagagaatgaacagccttccccgaaaaacaaaaccctatcccccaaattcaccaacttgacccaccttttctctttctcatca 9756480  T
Q  228 agtctgaacacatcaagcttta 249  Q
    || ||  ||||||||| |||||    
T  9756481 agcctatacacatcaatcttta 9756502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 195 - 243
Target Start/End: Original strand, 9686751 - 9686799
Alignment:
Q  195 gccaacttgacccatttcttctccttctcatcaagtctgaacacatcaa 243  Q
    |||||||||||||| |||||||| ||||||||||| ||||| |||||||    
T  9686751 gccaacttgacccacttcttctcgttctcatcaagcctgaatacatcaa 9686799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 51
Target Start/End: Complemental strand, 16011892 - 16011844
Alignment:
Q  3 ggataatcagacaaaggggaaacccggcattgatccaagtgaaaaacac 51  Q
    ||||||||||||||||| |||| ||| | ||||||||||||||||||||    
T  16011892 ggataatcagacaaaggtgaaatccgaccttgatccaagtgaaaaacac 16011844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 9695885 - 9695838
Alignment:
Q  1 caggataatcagacaaaggggaaacccggcattgatccaagtgaaaaa 48  Q
    |||||||| |||||||||| |||||||| | |||||||||||||||||    
T  9695885 caggataaccagacaaaggtgaaacccgaccttgatccaagtgaaaaa 9695838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 157
Target Start/End: Complemental strand, 16011797 - 16011768
Alignment:
Q  128 caaatccgaagcagaagcagaaaacgaaca 157  Q
    ||||||||||||||||||||||||||||||    
T  16011797 caaatccgaagcagaagcagaaaacgaaca 16011768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 168; Significance: 6e-90; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 1 - 348
Target Start/End: Complemental strand, 44689027 - 44688680
Alignment:
Q  1 caggataatcagacaaaggggaaacccggcattgatccaagtgaaaaacacacatcccacaaagcatctggtcaaaatcgttgaatgcatcatcactaaa 100  Q
    |||||||||| |||||||||||||| | || |||||||||||||||||||||||||||||||||||| | |||||||| |||||| |  |||  | | ||    
T  44689027 caggataatcggacaaaggggaaactctgcgttgatccaagtgaaaaacacacatcccacaaagcatatcgtcaaaatagttgaaggattcacaagtgaa 44688928  T
Q  101 gatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaac 200  Q
    ||| |||||||| |||||| ||| ||||||||||||||||| || |||||| ||| || |||||||||||||||||| ||||| |||||||||||  |||    
T  44688927 gattacacaattccctttggcaatagacaaatccgaagcagtagtagaaaatgaatattcattccccaagaacaaaattctattccctaaactcgttaac 44688828  T
Q  201 ttgacccatttcttctccttctcatcaagtctgaacacatcaagctttaaaccatcttcaccagggaaaccaaaacaatgagagtcatatatgtctacta 300  Q
    || ||||||||||| | ||||||||  ||  ||||||||||||||  || |||||||||||| ||||| ||||||| |||||||||||| ||||| ||||    
T  44688827 tttacccatttcttatgcttctcattgagcgtgaacacatcaagccgtagaccatcttcacccgggaacccaaaaccatgagagtcatagatgtccacta 44688728  T
Q  301 gcaacaactcacgctcactctctaccaggaatttcatgtcccctccat 348  Q
    ||||||||||||  |||||||||||||||||||| |||||||||||||    
T  44688727 gcaacaactcaccttcactctctaccaggaattttatgtcccctccat 44688680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 183 - 348
Target Start/End: Complemental strand, 13170744 - 13170579
Alignment:
Q  183 tcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacacatcaagctttaaaccatcttcaccagggaaaccaaaacaatgag 282  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||  ||| |||||    
T  13170744 tcccctaaactcgccaacttgacccatttcttctccttttcatcaagtctgaacacatcaagctttaaaccatattcaccagggaaaccgtaacgatgag 13170645  T
Q  283 agtcatatatgtctactagcaacaactcacgctcactctctaccaggaatttcatgtcccctccat 348  Q
     |||||| ||||| |||||||||||||||| ||| ||||| |||| ||||||||||||||||||||    
T  13170644 ggtcatagatgtccactagcaacaactcaccctcgctctcgaccaagaatttcatgtcccctccat 13170579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 7 - 123
Target Start/End: Complemental strand, 13170874 - 13170758
Alignment:
Q  7 aatcagacaaaggggaaacccggcattgatccaagtgaaaaacacacatcccacaaagcatctggtcaaaatcgttgaatgcatcatcactaaagatgac 106  Q
    ||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| || || ||||||||||||||||||||||||    
T  13170874 aatcagataaaggggaaagccggcattgatccaagtgaaaaacacacatcccacaaagcatctcgtcaacatagtggaatgcatcatcactaaagatgac 13170775  T
Q  107 acaatttcctttgacaa 123  Q
    |||||||||||||||||    
T  13170774 acaatttcctttgacaa 13170758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 107; Significance: 1e-53; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 36 - 348
Target Start/End: Original strand, 18991113 - 18991422
Alignment:
Q  36 tccaagtgaaaaacacacatcccacaaagcatctggtcaaaatcgttgaatgcatcatcactaaagatgacacaatttcctttgacaacagacaaatccg 135  Q
    ||||||| ||||||||||||||||||  |||| |  ||||||  | |||| ||||| ||| |||||| ||||||||| |||||||||||||| ||||| |    
T  18991113 tccaagtcaaaaacacacatcccacatcgcatgttatcaaaagggatgaacgcatcgtcaataaagacgacacaattccctttgacaacagataaatcag 18991212  T
Q  136 aagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaa 235  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||| |||||| |||  | || |   ||||| |||||   |||||| ||| || ||    
T  18991213 aagcagaagcagaaaacgaacatccattccccaagaacaaaaccctattccctaagctcttcgacct---ccattccttctttctctcattaagcctaaa 18991309  T
Q  236 cacatcaagctttaaaccatcttcaccagggaaaccaaaacaatgagagtcatatatgtctactagcaacaactcacgctcactctctaccaggaatttc 335  Q
    ||| |  || |||| ||| | ||| |||||||| ||||||||||| |||||| | ||||| ||||||||||||||||  |||| |||||||| |||||||    
T  18991310 caccttcagttttagacctttttcgccagggaacccaaaacaatgcgagtcacagatgtccactagcaacaactcaccttcacactctaccaagaatttc 18991409  T
Q  336 atgtcccctccat 348  Q
    || ||||||||||    
T  18991410 atatcccctccat 18991422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 87 - 238
Target Start/End: Original strand, 4428591 - 4428742
Alignment:
Q  87 gcatcatcactaaagatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatccc 186  Q
    ||||||||| |||||||||||||||| |||||   ||||||||| || |||||||| ||||||||| |||||||||||||||| |||||||| |||||||    
T  4428591 gcatcatcaataaagatgacacaattccctttagtaacagacaactcagaagcagaggcagaaaacaaacatccattccccaaaaacaaaaccctatccc 4428690  T
Q  187 ctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacac 238  Q
    | ||||||| ||| || ||||||||   | ||||||||||||| || |||||    
T  4428691 ccaaactcgtcaatttcacccatttacgcgccttctcatcaagcctaaacac 4428742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 87 - 194
Target Start/End: Original strand, 4439820 - 4439927
Alignment:
Q  87 gcatcatcactaaagatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatccc 186  Q
    ||||||||| |||||||||||||||| |||||   |||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |    
T  4439820 gcatcatcaataaagatgacacaattccctttagaaacacacaaatccgaagcagaagcagaaaacgaacatccattccccaaaaacaaaaccctatctc 4439919  T
Q  187 ctaaactc 194  Q
    | ||||||    
T  4439920 ccaaactc 4439927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 109 - 225
Target Start/End: Original strand, 235195 - 235311
Alignment:
Q  109 aatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgaccca 208  Q
    |||| ||||||  |||| ||||||||||||||||||||||||||||||||     ||||||||| |||||||||||||||||| | |||||||| |||||    
T  235195 aattccctttgggaacacacaaatccgaagcagaagcagaaaacgaacatagcaaccccaagaagaaaactctatcccctaaatttgccaacttcaccca 235294  T
Q  209 tttcttctccttctcat 225  Q
     ||||||||||| ||||    
T  235295 cttcttctccttttcat 235311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 105 - 220
Target Start/End: Complemental strand, 8814500 - 8814385
Alignment:
Q  105 acacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttga 204  Q
    |||||||| ||||||  |||| |||||||| |||||||||||||||| |||||      |||||| ||||||||||||||||||||| |||||||||| |    
T  8814500 acacaattccctttgggaacacacaaatccaaagcagaagcagaaaatgaacacaaggaccccaaaaacaaaactctatcccctaaattcgccaacttca 8814401  T
Q  205 cccatttcttctcctt 220  Q
    |||| |||||||||||    
T  8814400 cccacttcttctcctt 8814385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 101 - 218
Target Start/End: Original strand, 246841 - 246958
Alignment:
Q  101 gatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaac 200  Q
    |||||||||||| ||||||  |||| |||||||| |||||||||||||||| || ||      |||||||||||||||| |||| |||||| | ||||||    
T  246841 gatgacacaattccctttgtgaacacacaaatccaaagcagaagcagaaaatgaccagaacaaccccaagaacaaaactgtatctcctaaattagccaac 246940  T
Q  201 ttgacccatttcttctcc 218  Q
    || |||||||||||||||    
T  246941 ttcacccatttcttctcc 246958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 122 - 225
Target Start/End: Complemental strand, 251515 - 251412
Alignment:
Q  122 aacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttc 221  Q
    |||| |||||||||| |||||| ||||||| ||||||     |||||||||||||||||||||||||| | |||||||||| ||||| ||||| |||||     
T  251515 aacacacaaatccgatgcagaaacagaaaatgaacatagccaccccaagaacaaaactctatcccctatattcgccaactttacccacttcttttccttt 251416  T
Q  222 tcat 225  Q
    ||||    
T  251415 tcat 251412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 135 - 220
Target Start/End: Original strand, 231589 - 231674
Alignment:
Q  135 gaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctcctt 220  Q
    ||||||||||||||||| ||||||     |||||||||||||||| ||||||||||| | |||||||| ||||| ||| |||||||    
T  231589 gaagcagaagcagaaaatgaacatagggaccccaagaacaaaactatatcccctaaattagccaacttcacccacttcatctcctt 231674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 97 - 240
Target Start/End: Complemental strand, 20694447 - 20694304
Alignment:
Q  97 taaagatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgc 196  Q
    |||||||||||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||| |     
T  20694447 taaagatgacacaattccctttggcaacacacaaatccgaagcagaagcagaaaacgaacatccattccccaaaaacaaaaccctatcccccaaacttgt 20694348  T
Q  197 caacttgacccatttcttctccttctcatcaagtctgaacacat 240  Q
    |||  | ||||||||||||||||| |||||||| ||||||||||    
T  20694347 caaactcacccatttcttctccttttcatcaagcctgaacacat 20694304  T

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Target: chr6 (Bit Score: 73; Significance: 3e-33; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 95 - 243
Target Start/End: Original strand, 7041464 - 7041612
Alignment:
Q  95 actaaagatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactc 194  Q
    |||||||||||||||||| |||||| ||||  ||||||||||||||||| |||| ||||||||| | |  |||||||||||||| ||||||||||||||     
T  7041464 actaaagatgacacaattccctttggcaacgcacaaatccgaagcagaaacagagaacgaacatacttctcccaagaacaaaaccctatcccctaaacta 7041563  T
Q  195 gccaacttgacccatttcttctccttctcatcaagtctgaacacatcaa 243  Q
    | |||||| ||||| |||||||||||||||| |||| | |||| |||||    
T  7041564 gtcaacttcacccacttcttctccttctcattaagtttaaacaaatcaa 7041612  T

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Target: chr6; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 89 - 225
Target Start/End: Original strand, 7046801 - 7046937
Alignment:
Q  89 atcatcactaaagatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccct 188  Q
    |||| |||||| ||| |||||||| |||||| ||||| ||||||| |||  |||||||||||||||||||    ||||||||||||||||| ||||||||    
T  7046801 atcagcactaatgatcacacaattccctttggcaacatacaaatctgaaaaagaagcagaaaacgaacattttatccccaagaacaaaactttatcccct 7046900  T
Q  189 aaactcgccaacttgacccatttcttctccttctcat 225  Q
    |||||||  ||||| ||||| ||||||||||||||||    
T  7046901 aaactcgttaacttcacccacttcttctccttctcat 7046937  T

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Target: chr6; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 97 - 225
Target Start/End: Original strand, 7025720 - 7025854
Alignment:
Q  97 taaagatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacat------ccattccccaagaacaaaactctatcccctaa 190  Q
    ||||||||||| |||| |||||| ||||| ||||||| |||||| |||||||||||||||||      ||   ||||||||||||||| ||||| |||||    
T  7025720 taaagatgacagaattccctttggcaacacacaaatctgaagcacaagcagaaaacgaacataccaaccccaaccccaagaacaaaaccctatctcctaa 7025819  T
Q  191 actcgccaacttgacccatttcttctccttctcat 225  Q
    ||||| |||||| ||||| ||||||||||||||||    
T  7025820 actcgtcaacttcacccacttcttctccttctcat 7025854  T

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Target: chr6; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 97 - 225
Target Start/End: Original strand, 7012784 - 7012918
Alignment:
Q  97 taaagatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacat------ccattccccaagaacaaaactctatcccctaa 190  Q
    ||||||||||| |||| |||||| ||||| |||||||||||||| | |||||||||||||||      ||   ||||||||||||||  ||||| |||||    
T  7012784 taaagatgacagaattccctttggcaacacacaaatccgaagcacaggcagaaaacgaacataccaaccccaaccccaagaacaaaatcctatctcctaa 7012883  T
Q  191 actcgccaacttgacccatttcttctccttctcat 225  Q
    ||| | |||||| ||||| ||||||||||||||||    
T  7012884 acttgtcaacttcacccacttcttctccttctcat 7012918  T

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Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 164 - 225
Target Start/End: Original strand, 7029850 - 7029911
Alignment:
Q  164 ccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcat 225  Q
    ||||||||||||||| |||||||| ||||||| |||||| ||||| ||||||||||||||||    
T  7029850 ccccaagaacaaaaccctatccccgaaactcgtcaacttcacccacttcttctccttctcat 7029911  T

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Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 98 - 223
Target Start/End: Complemental strand, 9159646 - 9159515
Alignment:
Q  98 aaagatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacat------ccattccccaagaacaaaactctatcccctaaa 191  Q
    |||||||| |||||| ||||||  |||| ||||||| ||||||||| ||||||||||| ||      ||   ||||||||||||||| ||||||||||||    
T  9159646 aaagatgatacaattccctttggaaacacacaaatctgaagcagaaacagaaaacgaatataccaaccccaaccccaagaacaaaaccctatcccctaaa 9159547  T
Q  192 ctcgccaacttgacccatttcttctccttctc 223  Q
    ||||  || || ||||| ||||||||||||||    
T  9159546 ctcgttaatttcacccacttcttctccttctc 9159515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 98 - 225
Target Start/End: Original strand, 9170782 - 9170915
Alignment:
Q  98 aaagatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacat------ccattccccaagaacaaaactctatcccctaaa 191  Q
    |||||||| |||||| |||| |  |||| ||||||| ||||||||| ||||||||||| ||      ||   ||||||||||||||| ||||||||||||    
T  9170782 aaagatgatacaattcccttgggaaacacacaaatctgaagcagaaacagaaaacgaatataccaaccccaaccccaagaacaaaaccctatcccctaaa 9170881  T
Q  192 ctcgccaacttgacccatttcttctccttctcat 225  Q
    ||||  || || ||||| ||||||||||||||||    
T  9170882 ctcgttaatttcacccacttcttctccttctcat 9170915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 6e-19; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 98 - 230
Target Start/End: Original strand, 3695661 - 3695792
Alignment:
Q  98 aaagatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgcc 197  Q
    |||||| |||||||| |||||| || |||||||||||||||||  ||||||||| ||||||    | || |||||||||||||||||||||||||||  |    
T  3695661 aaagatcacacaattccctttggcagcagacaaatccgaagcaatagcagaaaatgaacatatgataccgaagaacaaaactctatcccctaaactctac 3695760  T
Q  198 aacttgacccatttcttctccttctcatcaagt 230  Q
    |||||||  || ||||||| |||||||| ||||    
T  3695761 aacttga-tcacttcttcttcttctcattaagt 3695792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 135 - 243
Target Start/End: Complemental strand, 450219 - 450111
Alignment:
Q  135 gaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctga 234  Q
    ||||||||||||||||| ||| |   ||  || |||||||||| | |||| |||||| ||  |||||||||||| || ||||||||||||||||| || |    
T  450219 gaagcagaagcagaaaaggaatacagatcgcctaagaacaaaattgtatctcctaaattcctcaacttgacccactttttctccttctcatcaagcctaa 450120  T
Q  235 acacatcaa 243  Q
    |||||||||    
T  450119 acacatcaa 450111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 51
Target Start/End: Complemental strand, 450363 - 450315
Alignment:
Q  3 ggataatcagacaaaggggaaacccggcattgatccaagtgaaaaacac 51  Q
    |||||||||||||| || |||||||| | ||||||||||||||||||||    
T  450363 ggataatcagacaagggtgaaacccgaccttgatccaagtgaaaaacac 450315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 105 - 229
Target Start/End: Original strand, 18571086 - 18571213
Alignment:
Q  105 acacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaa---aactctatcccctaaactcgccaact 201  Q
    |||||||| ||||||  |||| |||||||||||||||||  |||||| |||| | |  | || ||||||||   |||| ||||||||||||||| ||| |    
T  18571086 acacaattccctttggaaacacacaaatccgaagcagaaatagaaaaagaacctgccatgcctaagaacaaaacaactgtatcccctaaactcgtcaatt 18571185  T
Q  202 tgacccatttcttctccttctcatcaag 229  Q
    | ||||| ||||||||||||||||||||    
T  18571186 tcacccacttcttctccttctcatcaag 18571213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 98 - 225
Target Start/End: Original strand, 33541623 - 33541750
Alignment:
Q  98 aaagatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgcc 197  Q
    ||||| ||||||||| |||||| |||| |||||||| |||||||| |||||||| |||||  ||  ||| |||||||||||  |||| |||||||||       
T  33541623 aaagaggacacaattacctttggcaacggacaaatcagaagcagatgcagaaaaggaacagtcagcccctaagaacaaaacaatatctcctaaactcttt 33541722  T
Q  198 aacttgacccatttcttctccttctcat 225  Q
    ||||| ||||| | | ||||||||||||    
T  33541723 aacttcacccactccgtctccttctcat 33541750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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