View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10145A_low_107 (Length: 366)
Name: NF10145A_low_107
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_107 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 31 - 361
Target Start/End: Complemental strand, 4274629 - 4274298
Alignment:
| Q |
31 |
ttttgatattgtggcaatccattactatccttaatgttacgattgtcatttcaaagatctttaaatttaccgacgaatgttggttcaagtggcaagaaag |
130 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4274629 |
ttttgatattgtggcaatccattactatccttaatgttacgattgtcatttcaaagatctttaaatttaccgacgaatgttggttcaagtggcaagaaag |
4274530 |
T |
|
| Q |
131 |
tttggtgctcctaagtacgatatgaggttgagtcttgtaaatggagaaatttatgttattccctttattcttatctactgactcagttcatgtcatacat |
230 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4274529 |
tttggtgctcctaagtacgatatgaggttgaatcttgtaaatggaaaaatttatgttattccctttattcttatctactgactcagttcatgtcatacat |
4274430 |
T |
|
| Q |
231 |
atagtgttaacgacaaaatattctaacaagtccaataa-nnnnnnnncctaaatgttaatccgaatttgtttttcttaaactaaacaatctttaaatttt |
329 |
Q |
| |
|
||||||| |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4274429 |
atagtgtaaacgacaaaatattctaataagtccaataatttttttttcctaaatgttaatccgaatttgtttttcttaaactaaacaatctttaaatttt |
4274330 |
T |
|
| Q |
330 |
tcctggcgtgttccaatcctttaactccaaac |
361 |
Q |
| |
|
|||| ||||||||||||||||||| ||||||| |
|
|
| T |
4274329 |
tccttgcgtgttccaatcctttaattccaaac |
4274298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University