View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10145A_low_108 (Length: 366)
Name: NF10145A_low_108
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_108 |
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Alignment Details
Target: chr5 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 356
Target Start/End: Complemental strand, 13139065 - 13138711
Alignment:
| Q |
1 |
tcaataaaatctgctaaagctctacttttattaggtcaccgatnnnnnnnnttgacattagttttaataaacaaaaaaggcctcaattaaggaggttgag |
100 |
Q |
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| T |
13139065 |
tcaataaaatctgctaaagctctacttttattaggtcaccgataaaaaaaattgacattagttttaataaacaaaaaaggcctcaattaaggaggttgag |
13138966 |
T |
|
| Q |
101 |
actgaaagttttattaattaatacaattaaaaaatgattgatagaatgatcatatacgtttaaaagaatacatgttgacctcaatgtttcatacatcatg |
200 |
Q |
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| T |
13138965 |
actgaaagttttattaattaatacaattaaaaaatgattgatagaatgatcatatacgtttaaaagaatacatgatgacctcaatgtttaatacatcatg |
13138866 |
T |
|
| Q |
201 |
ttcatgccaatgaaagatgtattttgtgacnnnnnnnngttgtctagttctaacaacaaaaataaaactgtgtaaaatgattttagaaaacatttgtgtt |
300 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13138865 |
ttcatgccaatgaaagatgtattttgtgac-aaaaaaagttgtctagttctaacaacaaaaataaaactgtgtaaaatgattttagaaaacatttgtgtt |
13138767 |
T |
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| Q |
301 |
atttgatcatggtttcattgatgcacaataaggattaaaatatgacttaatattgt |
356 |
Q |
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|||||||||| |||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
13138766 |
atttgatcatagtttcattgatgcacaataaggattaaaatctgacttaatattgt |
13138711 |
T |
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