View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10145A_low_111 (Length: 365)

Name: NF10145A_low_111

Description: NF10145A

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF10145A_low_111

[»] scaffold0048 (2 HSPs)

Target: scaffold0048 (Bit Score: 141; Significance: 7e-74; HSPs: 2)

Name: scaffold0048

Description:

Target: scaffold0048; HSP #1

Raw Score: 141; E-Value: 7e-74

Query Start/End: Original strand, 5 - 217

Target Start/End: Original strand, 16131 - 16343

Alignment:

Q	5	agtttggagttactgaggcagctaacaataagatagttttcatgtgccctcctccaatgttggttctccggactgcagtgcctcccttgacaagcaccgg	104	Q
		\|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|
T	16131	agtttggtgtaactgaggcagctaacaataggatcgttttcatgtgccctcctccgatgttggttctccggactgcagtacctccctccacaagcaccgg	16230	T

Q	105	tgaagatggaccagcttttcaagttgcgcagtatttctgggcaaattagttattggatgtagttgttttatgggagggatgtgctggttgatatcgtcag	204	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\|\|\|\|\|\| \|\|\|
T	16231	tgaagatggaccagcttttcaagttgagttgtatttctgggcaaattagattttggaagtagttgttttatgggagggaagtcctggttgatatcagcag	16330	T

Q	205	tgtgatgttgtga	217	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|
T	16331	tgtgatgttgtga	16343	T

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Target: scaffold0048; HSP #2

Raw Score: 49; E-Value: 6e-19

Query Start/End: Original strand, 288 - 364

Target Start/End: Original strand, 16413 - 16489

Alignment:

Q	288	caacttaatgttttattaagtataagacttgatgtaatgttattgtgccattgaatgaaaagttaagtgttgtcttg	364	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\| \|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|
T	16413	caacttaatgtttttttaagtagaagacttgatgtaatgttgttgtgctattgaatgtgaagttaagtgttatcttg	16489	T

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