View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10145A_low_116 (Length: 363)

Name: NF10145A_low_116
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10145A_low_116
NF10145A_low_116
[»] chr1 (1 HSPs)
chr1 (13-363)||(49132979-49133322)


Alignment Details
Target: chr1 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 13 - 363
Target Start/End: Original strand, 49132979 - 49133322
Alignment:
Q  13 tggacatcatcaccatcaccgccgccgtcattgtaacaaacatgaacaccacttggatgacgagagaaatcactcactccacctctcaccaaaagccaat 112  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49132979 tggacatcaccaccatcaccgccgccgtcattgtaacaaacatgaacaccacttggatgacgagagaaatcactcactccacctctcaccaaaagccaat 49133078  T
Q  113 ggaaagcatgaggaggaattagctaagattggaacttnnnnnnnnnnnnnnnnnnngatggtggtcatcatgaaggaagaggcatgcctgagaatgttga 212  Q
    |||||||||||||||||||||||||||||||||||||                   |||||||||||||||||||||| |||||||||||||||| ||||    
T  49133079 ggaaagcatgaggaggaattagctaagattggaacttaaaaaaaaaaaa-------gatggtggtcatcatgaaggaaaaggcatgcctgagaatattga 49133171  T
Q  213 tggtcgaattgcttgatttataagaatatgttatcctgtcgaagaaatagaacatgttctgtaacattttatcattgttcttcaccagatttagctgtgt 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49133172 tggtcgaattgcttgatttataagaatatgttatcctgtcgaagaaatagaacatgttctgtaacattttatcattgttcttcaccagatttagctgtgt 49133271  T
Q  313 gtctatccattactttacttgatccaaagttggtgaacaattttcatcatt 363  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49133272 gtctatccattactttacttgatccaaagttggtgaacaattttcatcatt 49133322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University