View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10145A_low_118 (Length: 363)
Name: NF10145A_low_118
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_118 |
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Alignment Details
Target: chr3 (Bit Score: 152; Significance: 2e-80; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 5 - 362
Target Start/End: Complemental strand, 34849825 - 34849474
Alignment:
| Q |
5 |
aagtgagataaattatgtacataatgtattaaaattttagatgaagatgtggtgcgaatcttacttttgtggttgatcttagcctaaacggattatatnn |
104 |
Q |
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| T |
34849825 |
aagtgagataacttatgtacataatgtcttaagattttagatgaagatgtagtgtgaaacttacttttgtggttgatcttagtctaaactaattatagaa |
34849726 |
T |
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| Q |
105 |
nnnnnn--taggctccctcagaagacacaatattatgataaattgtttagttagttttggatatcatttattaaattttttcatcttaacatttatagtt |
202 |
Q |
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| T |
34849725 |
aaaaaaattaggctccttcagaagacacaatattatgatgaactatttagtt---tttgg-tatcatttattaaattttttcatcttaaaatttatagtt |
34849630 |
T |
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| Q |
203 |
tagggatgttatttgctttgatgctgnnnnnnnnattcaagatctattatttcaaatgattctacttttagtctttcgtgggacctaagaattgaaaaat |
302 |
Q |
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| T |
34849629 |
tagagatgt-atttgctttcatgct-ttttttttattcaagatctattatttcaaatgattt--cttttagtctttggtgggatctaagaattgaaaaat |
34849534 |
T |
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| Q |
303 |
gtagaagcgttatgttgagttggaaaaatatgttcattagatattttaagtcgatatgtg |
362 |
Q |
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| T |
34849533 |
gtagaagtgttatgctgagttgaaaaaatacgctcattagatattttaagtcgatatgtg |
34849474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 268 - 329
Target Start/End: Complemental strand, 10973943 - 10973885
Alignment:
| Q |
268 |
ttttagtctttcgtgggacctaagaattgaaaaatgtagaagcgttatgttgagttggaaaa |
329 |
Q |
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| T |
10973943 |
ttttagtctttggtgggatctaagaaatgaaaaatgt---agcgttatgttgagttgaaaaa |
10973885 |
T |
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