View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10145A_low_121 (Length: 359)
Name: NF10145A_low_121
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_121 |
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Alignment Details
Target: chr4 (Bit Score: 295; Significance: 1e-166; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 1 - 351
Target Start/End: Complemental strand, 31723642 - 31723292
Alignment:
| Q |
1 |
gcagttcaatggatgattcctgacacatccttgggaccaatctactgagttccatttttcaggaaacttaggcttgaacccttttaaacattcacatatt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31723642 |
gcagttcaatggatgattcctgacacatccttgggaccaatctattgagttccatttttcaggaaacttaggcttgaacccttttaaacattcacatatt |
31723543 |
T |
|
| Q |
101 |
ggtgaattagaaatgctgcaatatccattgactccacatcgaccataatggtcacaatcgtctcctggtattcttgaataaatattccatgattcgtcgt |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
31723542 |
ggtgaattagaaatgctgcaatatccattgactccacatcgaccataatggtcacaatcgtctcctggtattcttgaataaatattccatgatttgtcgt |
31723443 |
T |
|
| Q |
201 |
cctttgaccatacgtatcgtggacgatcgttactggtttggttaagtaccacttttgatattagtgaactatctttgatgttccatgtgtaataaacctc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||| |
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| T |
31723442 |
cctttgaccatacgtatcgtggacgatcgttactggtttggttaagtaccacttttgatatttgagtactatctttgatgttccatgtgtaataaacctc |
31723343 |
T |
|
| Q |
301 |
ttctttattgcagatgaagttgtaattgtaaacgttattaggcttcatctc |
351 |
Q |
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|||||||||||||| || |||||| || ||| ||||||||||||||| |
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|
| T |
31723342 |
ttctttattgcagacaaaattgtaactgaaaatagaattaggcttcatctc |
31723292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 348
Target Start/End: Complemental strand, 31701089 - 31700742
Alignment:
| Q |
1 |
gcagttcaatggatgattcctgacacatccttgggaccaatctactgagttccatttttcaggaaacttaggcttgaacccttttaaacattcacatatt |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| ||||||||||||||||||||| || |
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| T |
31701089 |
gcagttcaatggatgattcctgacacatccttgggaccaatccatcgagttccatttttcaggaaacttaggcttaaacccttttaaacattcacatgtt |
31700990 |
T |
|
| Q |
101 |
ggtgaattagaaatgctgcaatatccattgactccacatcgaccataatggtcacaatcgtctcctggtattcttgaataaatattccatgattcgtcgt |
200 |
Q |
| |
|
|||||||||| | ||||||| |||||||||||||||||| ||||||| |||||||||| |||| |||||||| ||||||||| ||||| ||||||||| |
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|
| T |
31700989 |
ggtgaattagtactgctgcagtatccattgactccacatagaccatagtggtcacaatagtctgctggtatttttgaataaagcatccataattcgtcgt |
31700890 |
T |
|
| Q |
201 |
cctttgaccatacgtatcgtggacgatcgttactggtttggttaagtaccacttttgatattagtgaactatctttgatgttccatgtgtaataaacctc |
300 |
Q |
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| |||||||||| ||| |||||||| || | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31700889 |
cttttgaccatatgtagcgtggacgttcataactggtttggttaagtaccacttttgatattagtgaactatctttgatgttccatgtgtaataaacctc |
31700790 |
T |
|
| Q |
301 |
ttctttattgcagatgaagttgtaattgtaaacgttattaggcttcat |
348 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31700789 |
ttctttattgcagatgaagttgtaattgtaaacgttattaggcttcat |
31700742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 347
Target Start/End: Complemental strand, 31716397 - 31716051
Alignment:
| Q |
1 |
gcagttcaatggatgattcctgacacatccttgggaccaatctactgagttccatttttcaggaaacttaggcttgaacccttttaaacattcacatatt |
100 |
Q |
| |
|
||||||||| | ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |
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| T |
31716397 |
gcagttcaaagtatgattcctgagacatccttgggaccaatctattgagttccatttttcaggaaacttaggcttgaacccttgtaaacatccacatatt |
31716298 |
T |
|
| Q |
101 |
ggtgaattagaaatgctgcaatatccattgactccacatcgaccataatggtcacaatcgtctcctggtattcttgaataaatattccatgattcgtcgt |
200 |
Q |
| |
|
|||||||||| | |||| ||||||||||||||||||||| ||||||||||||||||| |||||| |||||||||||||||| ||||||||||| ||| |
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|
| T |
31716297 |
ggtgaattagtactgctacaatatccattgactccacattgaccataatggtcacaaatgtctccaggtattcttgaataaaccctccatgattcgacgt |
31716198 |
T |
|
| Q |
201 |
cctttgaccatacgtatcgtggacgatcgttactggtttggttaagtaccacttttgatattagtgaactatctttgatgttccatgtgtaataaacctc |
300 |
Q |
| |
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| |||||||||||||| ||||||||||| |||||||||||||||||||||| |||||||| | | ||||||||||||||||||||||||||||||||||| |
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|
| T |
31716197 |
cttttgaccatacgtagcgtggacgatctttactggtttggttaagtaccatttttgatacttgagaactatctttgatgttccatgtgtaataaacctc |
31716098 |
T |
|
| Q |
301 |
ttctttattgcagatgaagttgtaattgtaaacgttattaggcttca |
347 |
Q |
| |
|
||||||||| |||| || |||||| || ||| | ||||||||||| |
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|
| T |
31716097 |
ttctttattccagacaaaattgtaactgaaaatatcattaggcttca |
31716051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 347
Target Start/End: Complemental strand, 31722271 - 31721925
Alignment:
| Q |
1 |
gcagttcaatggatgattcctgacacatccttgggaccaatctactgagttccatttttcaggaaacttaggcttgaacccttttaaacattcacatatt |
100 |
Q |
| |
|
||||||||| | ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |
|
|
| T |
31722271 |
gcagttcaaagtatgattcctgagacatccttgggaccaatctattgagttccatttttcaggaaacttaggcttgaacccttgtaaacatccacatatt |
31722172 |
T |
|
| Q |
101 |
ggtgaattagaaatgctgcaatatccattgactccacatcgaccataatggtcacaatcgtctcctggtattcttgaataaatattccatgattcgtcgt |
200 |
Q |
| |
|
|||||||||| | |||| ||||||||||||||||||||| ||||||||||||||||| |||||| |||||||||||||||| ||||||||||| ||| |
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| T |
31722171 |
ggtgaattagtactgctacaatatccattgactccacattgaccataatggtcacaaatgtctccaggtattcttgaataaaccctccatgattcgacgt |
31722072 |
T |
|
| Q |
201 |
cctttgaccatacgtatcgtggacgatcgttactggtttggttaagtaccacttttgatattagtgaactatctttgatgttccatgtgtaataaacctc |
300 |
Q |
| |
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| |||||||||||||| ||||||||||| |||||||||||||||||||||| |||||||| | | ||||||||||||||||||||||||||||||||||| |
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|
| T |
31722071 |
cttttgaccatacgtagcgtggacgatctttactggtttggttaagtaccatttttgatacttgagaactatctttgatgttccatgtgtaataaacctc |
31721972 |
T |
|
| Q |
301 |
ttctttattgcagatgaagttgtaattgtaaacgttattaggcttca |
347 |
Q |
| |
|
||||||||| |||| || |||||| || ||| | ||||||||||| |
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|
| T |
31721971 |
ttctttattccagacaaaattgtaactgaaaatatcattaggcttca |
31721925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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