View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10145A_low_126 (Length: 356)
Name: NF10145A_low_126
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_126 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 21 - 248
Target Start/End: Original strand, 24352650 - 24352877
Alignment:
| Q |
21 |
caacctgaaaatgtttgtgtctttgaattgataaacaagaaagatttggtttttaaagttcatgttttctaaaggaacaaagatgatgtatctgttttgt |
120 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||| || |||| ||||||||||||||||||||||||||||||| || ||||||||||||||||| |
|
|
| T |
24352650 |
caacctgaaaatgtttgtgtctttgaactgataaacaaggaaaatttagtttttaaagttcatgttttctaaaggaacagagttgatgtatctgttttgt |
24352749 |
T |
|
| Q |
121 |
atgttgtttgtttgagtgatggtaacaagaactaattaagtaacactatttcctttccctaaaattggtgaagtgagtaacgcttcagctttagttgtaa |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| ||||||| |
|
|
| T |
24352750 |
atgttgtttgtttgagtgatggtaacaagaactaattaagtaacactatttcctttccctaaaattggtgaagtgagcaacacttcagctttggttgtaa |
24352849 |
T |
|
| Q |
221 |
ttgtgcttgattttgaaatatttgaagg |
248 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
24352850 |
ttgtgcttgattttgaaatatttgaagg |
24352877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 31 - 94
Target Start/End: Complemental strand, 24364071 - 24364008
Alignment:
| Q |
31 |
atgtttgtgtctttgaattgataaacaagaaagatttggtttttaaagttcatgttttctaaag |
94 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
24364071 |
atgtttgtgtctttgaattgataaacaagaaagatttggtttttaaagttcatgtttactaaag |
24364008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 31 - 94
Target Start/End: Original strand, 24370472 - 24370535
Alignment:
| Q |
31 |
atgtttgtgtctttgaattgataaacaagaaagatttggtttttaaagttcatgttttctaaag |
94 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |
|
|
| T |
24370472 |
atgtttgtgtctttgaattgataaacaagaaagatttggtttttaaaattcatgtttactaaag |
24370535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 29 - 93
Target Start/End: Original strand, 24356063 - 24356127
Alignment:
| Q |
29 |
aaatgtttgtgtctttgaattgataaacaagaaagatttggtttttaaagttcatgttttctaaa |
93 |
Q |
| |
|
||||||||||||||| ||| ||||||||||| ||| ||| ||||||||||||||||||||||||| |
|
|
| T |
24356063 |
aaatgtttgtgtcttcgaactgataaacaaggaaggtttagtttttaaagttcatgttttctaaa |
24356127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 31 - 95
Target Start/End: Original strand, 24362910 - 24362974
Alignment:
| Q |
31 |
atgtttgtgtctttgaattgataaacaagaaagatttggtttttaaagttcatgttttctaaagg |
95 |
Q |
| |
|
||||||||||||||||| ||| ||||||| ||||||| ||||||||| |||||||||| |||||| |
|
|
| T |
24362910 |
atgtttgtgtctttgaactgacaaacaagcaagatttagtttttaaaattcatgttttataaagg |
24362974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 33 - 83
Target Start/End: Original strand, 24314062 - 24314112
Alignment:
| Q |
33 |
gtttgtgtctttgaattgataaacaagaaagatttggtttttaaagttcat |
83 |
Q |
| |
|
||||||||||||||| ||||||||||||| |||||||||||||| |||||| |
|
|
| T |
24314062 |
gtttgtgtctttgaactgataaacaagaaggatttggtttttaatgttcat |
24314112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 31 - 119
Target Start/End: Original strand, 24359394 - 24359479
Alignment:
| Q |
31 |
atgtttgtgtctttgaattgataaacaagaaagatttggtttttaaagttcatgttttctaaaggaacaaagatgatgtatctgttttg |
119 |
Q |
| |
|
|||||||||||||||| | ||||||||| ||||||| ||||||||||||||| ||||||| | |||||| | |||||||||||||| |
|
|
| T |
24359394 |
atgtttgtgtctttgagctcataaacaaggaagatttagtttttaaagttcatattttcta---ggacaaagttaatgtatctgttttg |
24359479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 31 - 76
Target Start/End: Original strand, 24346958 - 24347003
Alignment:
| Q |
31 |
atgtttgtgtctttgaattgataaacaagaaagatttggtttttaa |
76 |
Q |
| |
|
||||||||||||||||| ||||||||||||| |||||||||||||| |
|
|
| T |
24346958 |
atgtttgtgtctttgaactgataaacaagaaggatttggtttttaa |
24347003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 318
Target Start/End: Original strand, 24314270 - 24314311
Alignment:
| Q |
277 |
aatttcttatatttctaccatatttatcaaatcttagaaaga |
318 |
Q |
| |
|
|||||||||||||||| || ||||||||||||||||||||| |
|
|
| T |
24314270 |
aatttcttatatttctttcaaatttatcaaatcttagaaaga |
24314311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University