View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10145A_low_128 (Length: 355)
Name: NF10145A_low_128
Description: NF10145A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10145A_low_128 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 266; Significance: 1e-148; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 9 - 344
Target Start/End: Complemental strand, 31506073 - 31505741
Alignment:
| Q |
9 |
gctggtaacttatttacaatagattttctgtcaaaacaaagaagaggaaaatacgtacaacaaaaagcccccagtttcatagtgcaatggataatataaa |
108 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||| ||||||| ||||||| |||||||||||||| ||| |||||||||||||||||||| | | |
|
|
| T |
31506073 |
gctggtaacttatttacaataaattttctgtcaaaacatagaagagaaaaatacatacaacaaaaagccgccaatttcatagtgcaatggataa---ata |
31505977 |
T |
|
| Q |
109 |
taaatacatatatttttcaaggaacacagacatctgcaatgttaccatctgattttaccaagaatcacgtgtattaattcaaccggcaaagggaaaatca |
208 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| |
|
|
| T |
31505976 |
taaatacatatttttttcaaggaacacagacatctgcaatgttaccatctgattttaccaagaatcacgtgtatcaattcaaccgacaaagggaaaatca |
31505877 |
T |
|
| Q |
209 |
aatgaaaattggtttttctagaaggatgtaaccagcatagttgccttttgcataacagactacaatagaatagtttaaagcatcaattaacactagatag |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
31505876 |
aatgaaaattggtttttctagaaggatgtaaccagcatagttgccttttgcataacagactacaatagaatagtttaaagcatcaattaacactaggtaa |
31505777 |
T |
|
| Q |
309 |
caagggaatgttctcaccgttgagctgatgtccatc |
344 |
Q |
| |
|
||||| ||||||||||||||||||||||||| |||| |
|
|
| T |
31505776 |
caaggaaatgttctcaccgttgagctgatgtgcatc |
31505741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 9 - 344
Target Start/End: Original strand, 27608174 - 27608516
Alignment:
| Q |
9 |
gctggtaacttatttacaatagattttctgtcaaaacaaagaagaggaaaatacgtacaacaaaaagcccccagtttcatagtgcaatggataatataaa |
108 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27608174 |
gctggtaacttatttacaatcaattttctgtcaaaacaaagaagaggaaaatacgtacaacaaaaagcccccagtttcatagtgcaatggataatataaa |
27608273 |
T |
|
| Q |
109 |
taaatacatatatttttcaaggaacacagacatctgcaatgttaccatctgattttacc-aagaatcacgtgtattaattcaaccggcaaagggaaaatc |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || |||||||||||||||||||||||||||||| |
|
|
| T |
27608274 |
taaatacatatatttttcaaggaacacagacatctgcaatgttaccatctgatttttttgaagaattacatgtattaattcaaccggcaaagggaaaatc |
27608373 |
T |
|
| Q |
208 |
aaatgaaaattggtttttc-tagaaggatgtaaccagca---tagttgccttttgcataac--agactacaatagaatagtttaaagcatcaattaacac |
301 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||| ||||| |||||||||||| | ||||||||||||||||||||||||||||||||||| |
|
|
| T |
27608374 |
caatgaaaattggtttttcctagaaggatgtaaccagcagcatagtttccttttgcataaataaaactacaatagaatagtttaaagcatcaattaacac |
27608473 |
T |
|
| Q |
302 |
tagatagcaagggaatgttctcaccgttgagctgatgtccatc |
344 |
Q |
| |
|
|||||| ||||| ||||||||||||||||||||||||| |||| |
|
|
| T |
27608474 |
tagataacaaggaaatgttctcaccgttgagctgatgtgcatc |
27608516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 9 - 344
Target Start/End: Original strand, 34496630 - 34496968
Alignment:
| Q |
9 |
gctggtaacttatttacaatagattttctgtcaaaacaaagaagaggaaaatacgtacaacaaaaagcccccagtttcatagtgcaatggataatataaa |
108 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34496630 |
gctggtaacttatttacaataaattttctgtcaaaacaaagaagaggaaaatacgtacaacaaaaagcccccagtttcatagtgcaatggataatataaa |
34496729 |
T |
|
| Q |
109 |
taaatacatatatttttcaaggaacacagacatctgcaatgttaccatctga-ttttaccaagaatcacgtgtattaattcaaccggcaaagggaaaatc |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| || |||| |||||| || ||||||||||||||| |||||||||||||| |
|
|
| T |
34496730 |
taaatacatatatttttcaaggaacacagacatctgcaatgttaccattggatttttttgaagaattacatgtattaattcaaccagcaaagggaaaatc |
34496829 |
T |
|
| Q |
208 |
aaatgaaaattggttttt-ctagaaggatgtaaccagcatagttgccttttgcat-aacagactacaatagaatagtttaaagcatcaattaacactaga |
305 |
Q |
| |
|
|||||||||| |||||| ||||||||||||||||| ||||||| |||||||||| || | ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34496830 |
caatgaaaattagtttttcctagaaggatgtaaccaacatagtttccttttgcataaaaaaactacaatagaatagtttaaagcatcaattaacactaga |
34496929 |
T |
|
| Q |
306 |
tagcaagggaatgttctcaccgttgagctgatgtccatc |
344 |
Q |
| |
|
|| ||||| ||||||||||||||||||||||||| |||| |
|
|
| T |
34496930 |
taacaaggaaatgttctcaccgttgagctgatgtgcatc |
34496968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University